Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B02f
(521 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 188 5e-48
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 188 5e-48
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 188 5e-48
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 188 5e-48
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 188 5e-48
M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal degene... 32 0.41
BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p pro... 32 0.41
AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA... 32 0.41
AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD... 32 0.41
AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC... 32 0.41
AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB... 32 0.41
AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi p... 31 0.72
AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA... 31 0.72
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 188 bits (457), Expect = 5e-48
Identities = 89/136 (65%), Positives = 103/136 (75%)
Frame = +1
Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 292 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 471
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 472 KKKAQLVVIAHDVDPI 519
+KKAQLVVIAHDVDP+
Sbjct: 154 QKKAQLVVIAHDVDPL 169
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 188 bits (457), Expect = 5e-48
Identities = 89/136 (65%), Positives = 103/136 (75%)
Frame = +1
Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 292 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 471
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 472 KKKAQLVVIAHDVDPI 519
+KKAQLVVIAHDVDP+
Sbjct: 154 QKKAQLVVIAHDVDPL 169
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 188 bits (457), Expect = 5e-48
Identities = 89/136 (65%), Positives = 103/136 (75%)
Frame = +1
Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 292 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 471
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 472 KKKAQLVVIAHDVDPI 519
+KKAQLVVIAHDVDP+
Sbjct: 154 QKKAQLVVIAHDVDPL 169
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 188 bits (457), Expect = 5e-48
Identities = 89/136 (65%), Positives = 103/136 (75%)
Frame = +1
Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 292 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 471
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 472 KKKAQLVVIAHDVDPI 519
+KKAQLVVIAHDVDP+
Sbjct: 154 QKKAQLVVIAHDVDPL 169
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 188 bits (457), Expect = 5e-48
Identities = 89/136 (65%), Positives = 103/136 (75%)
Frame = +1
Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 292 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 471
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 472 KKKAQLVVIAHDVDPI 519
+KKAQLVVIAHDVDP+
Sbjct: 154 QKKAQLVVIAHDVDPL 169
>M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal
degeneration C protein protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 421 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDP 516
RP+ ++ T+ VT L +K +V+ HD+DP
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDP 648
>BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p
protein.
Length = 603
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 421 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDP 516
RP+ ++ T+ VT L +K +V+ HD+DP
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDP 590
>AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA,
isoform A protein.
Length = 603
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 421 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDP 516
RP+ ++ T+ VT L +K +V+ HD+DP
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDP 590
>AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD,
isoform D protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 421 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDP 516
RP+ ++ T+ VT L +K +V+ HD+DP
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDP 648
>AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC,
isoform C protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 421 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDP 516
RP+ ++ T+ VT L +K +V+ HD+DP
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDP 648
>AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB,
isoform B protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 421 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDP 516
RP+ ++ T+ VT L +K +V+ HD+DP
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDP 648
>AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi
protein.
Length = 127
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 427 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPI 519
N +R G N TK + + A +VV+A D +PI
Sbjct: 32 NQLRKGANEATKTLNRGLADIVVLAGDAEPI 62
>AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA
protein.
Length = 127
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 427 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPI 519
N +R G N TK + + A +VV+A D +PI
Sbjct: 32 NQLRKGANEATKTLNRGLADIVVLAGDAEPI 62
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,900,962
Number of Sequences: 53049
Number of extensions: 376761
Number of successful extensions: 2006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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