Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306B02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   146   6e-36
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           146   8e-36
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   2.5  
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    28   4.4  
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    28   4.4  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   5.8  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  146 bits (355), Expect = 6e-36
 Identities = 72/136 (52%), Positives = 89/136 (65%)
 Frame = +1

Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 292 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 471
           K  A  LFKIL KYRPE                          +P  ++ G N VT L+E
Sbjct: 80  KNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIE 138

Query: 472 KKKAQLVVIAHDVDPI 519
           + KAQLVVIAHDVDPI
Sbjct: 139 QNKAQLVVIAHDVDPI 154


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  146 bits (354), Expect = 8e-36
 Identities = 71/136 (52%), Positives = 89/136 (65%)
 Frame = +1

Query: 112 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 291
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 292 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 471
           K  A  LFK+L KYRPE                          +P  ++ G N VT L+E
Sbjct: 81  KNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIE 139

Query: 472 KKKAQLVVIAHDVDPI 519
           + KAQLVVIAHDVDPI
Sbjct: 140 QNKAQLVVIAHDVDPI 155


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 438  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 280
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 442 GTNTVTKLVEKKKAQLVVIAHD 507
           G +   KL+EK+ AQLVV+A D
Sbjct: 47  GLHECAKLIEKRVAQLVVLAED 68


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 442 GTNTVTKLVEKKKAQLVVIAHD 507
           G +   KL+EK+ AQLVV+A D
Sbjct: 47  GLHECAKLIEKRVAQLVVLAED 68


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 399 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 304
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,417,919
Number of Sequences: 28952
Number of extensions: 175430
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)