Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 114 9e-27
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 52 4e-08
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 46 5e-06
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 44 1e-05
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 44 1e-05
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 44 2e-05
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 41 1e-04
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 40 2e-04
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 39 4e-04
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 36 0.004
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 36 0.004
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 34 0.011
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 33 0.034
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 29 0.42
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 29 0.42
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 28 0.97
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 26 3.0
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 5.2
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 6.8
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 114 bits (274), Expect = 9e-27
Identities = 48/95 (50%), Positives = 70/95 (73%)
Frame = +1
Query: 175 VPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 354
VPRNF+LLEELE+G+KG+G+ + S+GL + DD+TL+ W I+GP + +ENR+YSLKI
Sbjct: 4 VPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIH 63
Query: 355 CGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQV 459
C YPD PP F+SRI++ V+ +TG V+ ++
Sbjct: 64 CDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKI 98
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 52.4 bits (120), Expect = 4e-08
Identities = 30/88 (34%), Positives = 44/88 (50%)
Frame = +1
Query: 181 RNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 360
R+ R+ +EL Q+ G W + D ++H GM GP TPYE + + IE
Sbjct: 5 RSRRIAKELADVQQDKQAGIQVWTINDD----ISHLKGMFRGPEGTPYEGGYFVVDIEIP 60
Query: 361 TRYPDEPPTARFISRIHMNCVNSQTGLV 444
YP PP F ++I+ V+SQTG +
Sbjct: 61 IDYPFRPPKMNFDTKIYHPNVSSQTGAI 88
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 45.6 bits (103), Expect = 5e-06
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 277 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 429
L HW I+GP +PY ++ L I T YP +PP F +RI+ +NS
Sbjct: 30 LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS 80
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 44.0 bits (99), Expect = 1e-05
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 190 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 369
RL+ + ++ Q+ G +S SD+ M W +IIGP TP+E+ + L + +Y
Sbjct: 8 RLMRDFKRMQQDPPAG-VSASPVSDNVML---WNAVIIGPADTPFEDGTFKLVLSFDEQY 63
Query: 370 PDEPPTARFISRI-HMN 417
P++PP +F+S + H N
Sbjct: 64 PNKPPLVKFVSTMFHPN 80
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 44.0 bits (99), Expect = 1e-05
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 262 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 402
D D L HW G I GP T YE + + + YP PPT F S
Sbjct: 53 DSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTS 99
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 43.6 bits (98), Expect = 2e-05
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 190 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 369
RL +E Q G G + L+ D+ + HW +I GP TPYE + L I Y
Sbjct: 7 RLHKEYASFQAGDISGLLL--LKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGY 64
Query: 370 PDEPPTARFISRI-HMN 417
P PP+ F ++I H N
Sbjct: 65 PISPPSVYFQTKIVHPN 81
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 40.7 bits (91), Expect = 1e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 190 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 369
RL++E ++ + DG I+ G ++DD W +I GP TP+E +Y ++ + Y
Sbjct: 9 RLMKEYKELTENGPDG-ITAGPSNEDDFFT--WDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 370 PDEPPTARF 396
P PPT +F
Sbjct: 66 PLGPPTLKF 74
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 39.9 bits (89), Expect = 2e-04
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 190 RLLEELEQGQKGVGDGTISWGLESDDD-MTLTHWTGMIIGPPRTPYENRMYSLKIECGTR 366
RL EE +Q ++ G + +S D + L +W I G P+T +E +Y L +
Sbjct: 8 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 67
Query: 367 YPDEPPTARFISRI-HMNCVNSQT 435
YP PP RF + H N S T
Sbjct: 68 YPTRPPKCRFTPPLFHPNVYPSGT 91
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 39.1 bits (87), Expect = 4e-04
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 193 LLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYP 372
L ++L++ QK G S GL DD ++ W MIIGP T YE + + YP
Sbjct: 10 LRKQLKEIQKNPPQG-FSVGLV--DDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYP 66
Query: 373 DEPPTARFISRI-HMN 417
PP +F + I H N
Sbjct: 67 LMPPKMKFTTEIWHPN 82
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 277 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 402
+ W +I GPP TPYE Y + YP +PP R I+
Sbjct: 34 ILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMIT 75
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 268 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 411
D L HW +GP + Y + ++ YP +PPT F +RI+
Sbjct: 33 DDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIY 80
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 34.3 bits (75), Expect = 0.011
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 304 GPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 444
GP TPY ++ + +E + YP + P+ F++RI ++ +G V
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSV 84
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 32.7 bits (71), Expect = 0.034
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = +1
Query: 190 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 369
R+++E+E + G ++ E + L ++ + GP ++ YE + L++ Y
Sbjct: 6 RIIKEIETLTRDPPPGIVAAPTEDN----LRYFKITMEGPQQSAYEGGKFHLELFLPDEY 61
Query: 370 PDEPPTARFISRIH 411
P PP RF+++I+
Sbjct: 62 PMMPPNVRFLTKIY 75
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 29.1 bits (62), Expect = 0.42
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 184 NFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHW----TGMIIGPPRTPYENRMYSLKI 351
++RLL E+ G +WG+ +DD ++ W +G I+ +TPYE M L+
Sbjct: 340 SYRLLPVEERNISCSGRDDFAWGILNDDWVSHPTWASEESGFIV-QRKTPYEEAMTKLEE 398
Query: 352 E 354
E
Sbjct: 399 E 399
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 115 KLRLIQSSFIA*ALPKQIRFI*SKYGNLQQSN 20
K RL++S F +LP Q+RF+ Y NL+ N
Sbjct: 27 KFRLLESQFALYSLPCQLRFV--HYNNLEDPN 56
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 294 SSPMSKSHIIIAFKTPRNGSIA 229
SSPMS+SH+ I+ + PR G A
Sbjct: 439 SSPMSESHVQISSEMPRTGMSA 460
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +1
Query: 301 IGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 411
I P Y+ + +I+ YP +PP + +++I+
Sbjct: 58 IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIY 94
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 181 RNFRLLEELEQGQKGVGDGTISW 249
R+ R+LE LEQ +G+ GT+ +
Sbjct: 628 RSVRMLEPLEQHGRGIYSGTLGY 650
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 244 KWFHRPLPFGLVQVLLRDENSV 179
K F RP+P L+Q+ L D+N +
Sbjct: 890 KVFQRPIPLLLLQLFLVDDNGL 911
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,043
Number of Sequences: 5004
Number of extensions: 45920
Number of successful extensions: 117
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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