Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306B01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 152 2e-37
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 51 6e-07
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 51 6e-07
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 50 8e-07
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 50 1e-06
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 50 1e-06
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 44 7e-05
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 42 3e-04
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 38 0.003
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 35 0.041
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 34 0.054
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 34 0.054
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 33 0.12
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 33 0.12
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 33 0.12
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 32 0.29
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 32 0.29
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 31 0.38
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 31 0.38
Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical pr... 31 0.50
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 2.7
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 2.7
AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical ... 29 2.7
Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 27 6.2
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 152 bits (368), Expect = 2e-37
Identities = 65/97 (67%), Positives = 77/97 (79%)
Frame = +1
Query: 169 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 348
V VPRNFRLLEELE+GQKG GDG ISWGLE D DMTLT WT IIGPPRTPYE+R+Y+L+
Sbjct: 2 VDVPRNFRLLEELEEGQKGKGDGNISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQ 61
Query: 349 IECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQV 459
I+CG YP EPPT RF +++HM VN G++D R +
Sbjct: 62 IQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRNL 98
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 50.8 bits (116), Expect = 6e-07
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 169 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 348
+ P RL+ + ++ Q+ G G ++D++ LT W +I GP TP+E+ + L
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVS--GAPTEDNI-LT-WEAIIFGPQETPFEDGTFKLS 56
Query: 349 IECGTRYPDEPPTARFISRI-HMN 417
+E YP++PPT +FIS++ H N
Sbjct: 57 LEFTEEYPNKPPTVKFISKMFHPN 80
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 50.8 bits (116), Expect = 6e-07
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 169 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 348
+ P RL+ + ++ Q+ G G ++D++ LT W +I GP TP+E+ + L
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVS--GAPTEDNI-LT-WEAIIFGPQETPFEDGTFKLS 56
Query: 349 IECGTRYPDEPPTARFISRI-HMN 417
+E YP++PPT +FIS++ H N
Sbjct: 57 LEFTEEYPNKPPTVKFISKMFHPN 80
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 50.4 bits (115), Expect = 8e-07
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +1
Query: 277 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 444
LT G I GPP TPY M+ L I+ +YP PP +F ++I V+SQTG++
Sbjct: 36 LTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVI 91
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 277 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 429
L HW I+GPP +PY+ ++ L I T YP +PP F +RI+ +NS
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 277 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 429
L HW I+GPP +PY+ ++ L I T YP +PP F +RI+ +NS
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 232 DGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI- 408
DG S GL D+D + W ++IGPP T YE + ++ YP +PP +FIS I
Sbjct: 21 DG-FSAGLVDDND--IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIW 77
Query: 409 HMN 417
H N
Sbjct: 78 HPN 80
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 292 GMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPN 465
G+I G TPYE ++ L I+ G YP + PT +FI++I V+ G + V N
Sbjct: 383 GIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDN 440
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 286 WTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 417
WT I GPP+T Y+ + I + YP PP+ +F +++ H N
Sbjct: 42 WTVGIYGPPKTLYQGGYFKASIRFPSNYPYSPPSMKFTTKVWHPN 86
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 34.7 bits (76), Expect = 0.041
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 268 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 384
+ + W +IIG P+TPYE +Y K+ +P +PP
Sbjct: 34 ETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFKPP 72
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 34.3 bits (75), Expect = 0.054
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Frame = +1
Query: 292 GMIIGPPRTPYENRMYSLKIECGTRYPDEPP---------------TARFISRIHMNCVN 426
G I GP TPY + +K++ YP EPP A+F++RI ++
Sbjct: 55 GFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNIS 114
Query: 427 SQTGLV 444
SQTG +
Sbjct: 115 SQTGTI 120
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 34.3 bits (75), Expect = 0.054
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +1
Query: 304 GPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 444
GP T YEN ++ ++++ +YP + P+ F+++I ++ +G V
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTV 87
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 295 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 402
+I GP TPY N ++ I T YP PP F++
Sbjct: 448 LISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLT 483
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 190 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 369
RL+ E ++ +G I+ ++ D+ W +I GP T + N ++ +I Y
Sbjct: 8 RLMTEYKELTTRPPEGIIAAPIDEDN---FFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 370 PDEPPTARFISRI-HMN 417
P PP RF I H N
Sbjct: 65 PLSPPKMRFTCGIFHPN 81
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 190 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 369
RL++EL Q + +G + + +D L W ++G T Y ++ L+ G +Y
Sbjct: 8 RLMKELAQLKSEAPEGLLVDNTSTSND--LKQWKIGVVGAEGTLYAGEVFMLQFTFGPQY 65
Query: 370 PDEPPTARFI 399
P P F+
Sbjct: 66 PFNSPEVMFV 75
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 244 SWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 351
S G DD L HW I+GPP +PY+ ++ L I
Sbjct: 22 STGSVGDD---LYHWQATIMGPPESPYQGGIFFLTI 54
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 265 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 411
D+ ++ MI GP +P+ ++ L++ YP P RF+++I+
Sbjct: 29 DESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIY 77
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 298 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 444
I GP TPYE ++ + + YP+ P +F + I V TG V
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQV 83
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 265 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 411
++ L WT ++I P + PY + + I YP +PP F ++I+
Sbjct: 28 EETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPFKPPKVAFETKIY 75
>Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical
protein F54G8.2 protein.
Length = 812
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +1
Query: 229 GDGTISWGLESDDDMTLTH 285
GDGTI W LES D MT H
Sbjct: 485 GDGTIGWVLESMDKMTFPH 503
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 256 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 423
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 256 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 423
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 256 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 423
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical
protein Y48G9A.10 protein.
Length = 722
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 184 NFRLLEELEQGQKGVGDGTISWGLESDDDMTL 279
N +LLE +E Q + T WG+E+ D M++
Sbjct: 358 NKKLLEVIETSQYVISMDTAKWGVETSDKMSV 389
>Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 309 WANNHSSPMSKSHIIIAFKTPRNGSIAHSLLALFKF 202
+A NH S +HII F P+NG +L F F
Sbjct: 188 FAGNHESNSIFNHIIHRFTMPKNGVYNDNLFWSFDF 223
>Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 309 WANNHSSPMSKSHIIIAFKTPRNGSIAHSLLALFKF 202
+A NH S +HII F P+NG +L F F
Sbjct: 188 FAGNHESNSIFNHIIHRFTMPKNGVYNDNLFWSFDF 223
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 27.5 bits (58), Expect = 6.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 322 YENRMYSLKIECGTRYPDEPPTARFISRIH 411
Y+N +++L ++ YP +PP +F ++
Sbjct: 57 YKNMIFTLTLDVNVEYPFKPPYLKFCHNVY 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,173,777
Number of Sequences: 27780
Number of extensions: 255644
Number of successful extensions: 575
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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