Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A12f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   5.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   5.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.6  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   8.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 182 LVIYKM*-LSNIHNGHQIHAFVLEVFFFPNCSPSSMVVMNSQP 57
           +VI+K   + N  N   ++  V ++     C+P+ +V +NS+P
Sbjct: 91  IVIFKTKDMRNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRP 133


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 182 LVIYKM*-LSNIHNGHQIHAFVLEVFFFPNCSPSSMVVMNSQP 57
           +VI+K   + N  N   ++  V ++     C+P+ +V +NS+P
Sbjct: 91  IVIFKTKDMRNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRP 133


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -1

Query: 401  LFIFLVKSKHVLLMMLYENKLNC 333
            LF F + ++ ++  +L+  + NC
Sbjct: 979  LFFFCMAAEFIIAALLHPQEFNC 1001


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -1

Query: 401  LFIFLVKSKHVLLMMLYENKLNC 333
            LF F + ++ ++  +L+  + NC
Sbjct: 979  LFFFCMAAEFIIAALLHPQEFNC 1001


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 129 VNLMTVMNVA*LHFVNY 179
           ++ + +++ + LHFVNY
Sbjct: 202 ISFLLIISYSTLHFVNY 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,262
Number of Sequences: 336
Number of extensions: 2116
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)