Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.062
SB_4525| Best HMM Match : Sugar_tr (HMM E-Value=0.028)                 32   0.33 
SB_8407| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_2179| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_57462| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1061

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -1

Query: 482 WVAPGYISVTLRVSVAACSV*D**KNILFIFLVKSKHVLLMMLYENKLNCYYRYH 318
           + A G + V L+V  A   V D   N+  I++ + ++V  + +YEN L  ++++H
Sbjct: 580 YAANGIVKVLLQVREATADVPDVWLNLAHIYVEQKQYVSAIQMYENCLRKFFKHH 634


>SB_4525| Best HMM Match : Sugar_tr (HMM E-Value=0.028)
          Length = 630

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 1   FALLPLIAGCVTFLLPETKGCEFMTTIEEGE 93
           F L  +IAG +T+LLPET   +   TIE+ E
Sbjct: 142 FGLSAIIAGAMTYLLPETLFAKMHQTIEQTE 172



 Score = 31.9 bits (69), Expect = 0.33
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 1   FALLPLIAGCVTFLLPETKGCEFMTTIEEGE 93
           F L  +IAG +T+LLPET   +   TIE+ E
Sbjct: 547 FGLSAIIAGAMTYLLPETLFAKMHQTIEQTE 577


>SB_8407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   FALLPLIAGCVTFLLPETKGCEFMTTIEEGE 93
           F +L LIA  VTF +PET       TIEE E
Sbjct: 15  FGVLSLIAAMVTFWIPETIYSNMHQTIEEAE 45


>SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   FALLPLIAGCVTFLLPETKGCEFMTTIEEGE 93
           F +L LIA  VT+ +PET       TIEE E
Sbjct: 8   FGVLSLIAAMVTYWIPETIYSNMHQTIEEAE 38


>SB_2179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 1   FALLPLIAGCVTFLLPETKGCEFMTTIEEGE 93
           F ++ ++AG +T LLPET       TIEE E
Sbjct: 15  FGVVSMVAGILTLLLPETLRQPMHQTIEEEE 45


>SB_57462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 1   FALLPLIAGCVTFLLPETKG 60
           F  L + AG VTF LPET+G
Sbjct: 75  FGGLSMTAGMVTFFLPETRG 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,311,095
Number of Sequences: 59808
Number of extensions: 223901
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)