Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   4.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.7  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 298 NYNTMSSCN*KSSRYKNIRMYYSI 227
           NYN  ++ N  ++ YK ++ YY+I
Sbjct: 93  NYNNYNNNNYNNNNYKKLQ-YYNI 115


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 298 NYNTMSSCN*KSSRYKNIRMYYSI 227
           NYN  ++ N  ++ YK ++ YY+I
Sbjct: 93  NYNNYNNNNYNNNNYKKLQ-YYNI 115


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 298 NYNTMSSCN*KSSRYKNIRMYYSI 227
           NYN  ++ N  ++ YK ++ YY+I
Sbjct: 93  NYNNYNNNNYNNNNYKKLQ-YYNI 115


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 298 NYNTMSSCN*KSSRYKNIRMYYSI 227
           NYN  ++ N  ++ YK ++ YY+I
Sbjct: 93  NYNNYNNNNYNNNNYKKLQ-YYNI 115


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 515 YLRRLVTVSQRWV 477
           +L+RL+T  ++WV
Sbjct: 24  FLKRLITGDEKWV 36


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 380 SKHVLLMMLYENKLNCYYRYH 318
           S  VL+  +   +  CYY YH
Sbjct: 373 SGRVLMRTVRGKEKTCYYPYH 393


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 380 SKHVLLMMLYENKLNCYYRYH 318
           S  VL+  +   +  CYY YH
Sbjct: 373 SGRVLMRTVRGKEKTCYYPYH 393


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 407 NILFIFLVKSKHVLLMMLY 351
           N L+I ++ S HV+ ++LY
Sbjct: 566 NTLWILVMVSVHVVALVLY 584


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 515 YLRRLVTVSQRWV 477
           +L+RL+T  ++WV
Sbjct: 145 FLKRLITGDEKWV 157


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 296 ILHVQLNNGICNNN*VCFH 352
           IL   +++ IC+N  +C H
Sbjct: 364 ILSPSIHDNICSNGWICEH 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,525
Number of Sequences: 438
Number of extensions: 2449
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)