Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79410.1 68414.m09254 transporter-related low similarity to o...    29   2.5  
At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At1g79410.1 68414.m09254 transporter-related low similarity to
           organic anion transporter 3 [Rattus norvegicus]
           GI:5545293; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 515

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 25  GCVTFLLPETKGCEFMTTIEEGEQ 96
           G    LLPETKG     T+EE EQ
Sbjct: 481 GLFALLLPETKGLSLCDTMEEQEQ 504


>At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 689

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 161 LSNIHNGHQIHAFVLEVFFFPNCS-PSSMVVMNSQ 60
           L  I  G +IH + L+  F PN S  +S++VM S+
Sbjct: 431 LRAIKQGKEIHCYALKNLFLPNVSLVTSLMVMYSK 465


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,291,731
Number of Sequences: 28952
Number of extensions: 153695
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)