Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A11f
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   3.7  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   4.9  

>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 104 YNRLR*MYRSWNRK*LRLDYSQVRLAF--FSLYVYIYTLYFDAH 229
           +++LR  + +W R+  R  +SQ   AF   +L+V +Y++  + H
Sbjct: 24  WHKLRNYHGAWYRRISRRRFSQFIFAFGLMTLFVLVYSISSNLH 67


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 352 DRSILVGVPPVPTQSPHPEILTMT*RSASDIKNYNVL 242
           +RS+   +  +P Q P PE +T++  SA  ++N + L
Sbjct: 65  ERSVTSRLVRLPAQDPPPEQVTLSPESAKLLRNAHEL 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,017
Number of Sequences: 5004
Number of extensions: 38821
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)