Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A11f
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936...    28   3.7  
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272...    27   6.5  
08_02_0116 + 12762009-12763021,12763421-12763436                       27   8.7  

>11_04_0370 +
           16891334-16891469,16891556-16891707,16893277-16893639,
           16893832-16893929,16893983-16896029
          Length = 931

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 170 VRLAFFSLYVYIYTLYFDAHVVLW 241
           ++L F SL +Y+   YFD  +V+W
Sbjct: 337 LKLCFVSLSLYLKDTYFDESIVVW 360


>11_05_0007 - 18324969-18325063,18326580-18326745,18327078-18327275,
            18327377-18327643,18328070-18328129,18328767-18329033,
            18329156-18329359,18329441-18331496,18332517-18333358
          Length = 1384

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -1

Query: 380  QMEQKELVVRSKHFGRGPACANSISAPRNSYNDMTISFRY*KL*CLTIKLHVHQNIKCKY 201
            + E+KE +++   FGRG  C   I         +TIS +   +  LT     H  +  +Y
Sbjct: 1228 KQEEKEGIIKIGSFGRGGGCRCDIKVTPQHLESITISSKI-VINSLTFSYRSHDGL--QY 1284

Query: 200  IRTVKRTQGELDYNLVL 150
            I       GE +Y + L
Sbjct: 1285 ILGPWGGGGENNYKINL 1301


>08_02_0116 + 12762009-12763021,12763421-12763436
          Length = 342

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 329 PACANSISAPRNSYNDMTISFRY*KL*CLTIKLHVHQNIKCKYIRTVKRTQ 177
           P   N I      YND+ I F +    C  +KL VH +  CK  + V   Q
Sbjct: 226 PCSRNVIFHIFGEYNDLGIYFVHRVYICSDLKLPVHVDKTCKLEKNVIANQ 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,586
Number of Sequences: 37544
Number of extensions: 230641
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)