Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A11f
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.20 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 191 LYVYIYTLYFDAHVVLW 241
           ++ Y++ LY D HV++W
Sbjct: 47  MFTYLHLLYQDVHVMIW 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 316  LAQAGPLPKCFD 351
            +A A P+P CFD
Sbjct: 1048 MASAAPMPACFD 1059



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 132 ERYIHLRRLYIKREL 88
           ER  HLR LY++  L
Sbjct: 863 ERLSHLRELYLQNNL 877


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 IVRGIENN*D*IIVKFALR 182
           ++R + NN D ++VK  LR
Sbjct: 35  LIRPVSNNNDTVVVKLGLR 53


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = -2

Query: 505 NTYNPNLHISKNTGGQTPTKSQEXTXGKRIXRNSIV 398
           N YN +  +  N  G+T +  +E    + +  N ++
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLL 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,643
Number of Sequences: 438
Number of extensions: 2941
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)