Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A11f
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i...    28   4.2  
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa...    27   9.6  

>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
           identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH4 (SUVH4) GI:13517748
          Length = 624

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 404 YSNLXDNPQMEQKELVVR-SKHFGRGPACANSISAPRNSYN 285
           Y +L D   +E +++V     H G GP C N  S  R  +N
Sbjct: 407 YVDLNDGRLIESRDVVFECGPHCGCGPKCVNRTSQKRLRFN 447


>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase family
            protein similar to inositol polyphosphate 5-phosphatase
            II isoform (GI:15418718) [Mus musculus]; contains 6 (5
            weak) Pfam: Pf00400 WD domain, G-beta repeats and Pfam
            PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 1101

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 148  LFSIPRTIHSSKTVIYQTRT*ILIAHPNRTNVNIKKGKCVCD 23
            L  +P TI S+  +I Q +   ++   N++  NI   K +C+
Sbjct: 915  LSKVPETIVSTNNIILQNQDSTILRITNKSEKNIAFFKIICE 956


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,173,341
Number of Sequences: 28952
Number of extensions: 195781
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)