Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A10f
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   120   1e-28
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.5  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   4.4  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   4.4  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   5.8  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   7.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.7  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   7.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  120 bits (289), Expect = 1e-28
 Identities = 53/83 (63%), Positives = 66/83 (79%)
 Frame = +2

Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPXINQFTQTLD 337
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 338 KTTAKGLFKILEKYRPETEQQKE 406
           K TA  +FK+L KYRPET  +K+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKK 106


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 272 KAVLQRRLKVPPXINQFTQTLDKTTAKGLFKILE 373
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 256 PHPAPEGCTSASSESAPXDQPIYPDTGQDY 345
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +2

Query: 314 NQFTQTLDKTTAKGL----FKILEKYRPETEQ 397
           NQ   ++D+ T KGL    +K+LEK  PE  Q
Sbjct: 145 NQRIGSVDQLTTKGLSKLTYKVLEKLFPENTQ 176


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 344 TAKGLFKILEKYR 382
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/63 (23%), Positives = 23/63 (36%)
 Frame = +1

Query: 133 KG*AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPXD 312
           KG  Q+    S  +E ++L     H                P P P    S + ESAP +
Sbjct: 280 KGAIQDSSIQSYLDEEEKLSRELDHKTKDASSTNDSQTTPLPPPPPVAVNSTNDESAPQN 339

Query: 313 QPI 321
           + +
Sbjct: 340 EEL 342


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 193 HWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPXDQPIYPDTGQDYS 348
           ++  +  N  + Q+   A  YP+ +     SAS  S+P      P T +  S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 151 DRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASS 294
           D  SS+   A++L H       S  + I    +V+ HP   GCTS SS
Sbjct: 222 DLPSSISSAAQDLLHRMLDVNPSTRITI---PEVFSHPFLMGCTSLSS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,513
Number of Sequences: 5004
Number of extensions: 30646
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)