Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A10f
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   3e-30
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        30   1.1  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_23894| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_2365| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  128 bits (308), Expect = 3e-30
 Identities = 55/84 (65%), Positives = 70/84 (83%)
 Frame = +2

Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPXINQFTQTLD 337
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 338 KTTAKGLFKILEKYRPETEQQKES 409
           + +   LFK+L KYRPET+ +K++
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKA 112


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +2

Query: 356 LFKILEKYRPETEQQKES 409
           LFK+L KYRPET+ +K++
Sbjct: 4   LFKLLHKYRPETKAEKKA 21


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 227 SRFVRWPKYIRIQRQKAVLQRRLKVPPXINQFTQTLDKTTAKGLFKILEK 376
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


>SB_23894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 203 PDQWQSSLASSRREDSRS 150
           PDQW+S LAS    DS S
Sbjct: 1   PDQWESYLASKSESDSSS 18


>SB_2365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 203 PDQWQSSLASSRREDSRS 150
           PDQW+S LAS    DS S
Sbjct: 1   PDQWESYLASKSESDSSS 18


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,883,862
Number of Sequences: 59808
Number of extensions: 236778
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)