Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A09f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    28   0.058
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   5.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 356 CSAGRVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCE 493
           C  G VC I++ G  +C    DCP  T+         NE   + C+
Sbjct: 385 CQNGGVCRISDGGGYIC----DCPSGTNGTNCEIDTINECDSNPCK 426


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 230 SLDEKRYHEAEIARV 274
           SLDEK+Y   E+ RV
Sbjct: 334 SLDEKKYILQEVVRV 348


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +3

Query: 348 KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 515
           +  A  D S     T T    A   V   Q  D W      + G R+    ASDA+
Sbjct: 549 RGKALMDKSVMKKYT-TRSTQAKHYVQYDQGEDRWLCTLLLQRGYRVEYSAASDAF 603


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 435 QTPDAWCAQTSTKPGNRIAKYTASDAY 515
           Q  D W      + G R+    ASDAY
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAY 863


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 435 QTPDAWCAQTSTKPGNRIAKYTASDAY 515
           Q  D W      + G R+    ASDAY
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAY 863


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +3

Query: 348 KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 515
           +  A  D S     T T    A   V   Q  D W      + G R+    ASDA+
Sbjct: 782 RGKALMDKSVMKKYT-TRSTQAKHYVQYDQGEDRWLCTLLLQRGYRVEYSAASDAF 836


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +3

Query: 348 KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAY 515
           +  A  D S     T T    A   V   Q  D W      + G R+    ASDA+
Sbjct: 782 RGKALMDKSVMKKYT-TRSTQAKHYVQYDQGEDRWLCTLLLQRGYRVEYSAASDAF 836


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 435 QTPDAWCAQTSTKPGNRIAKYTASDAY 515
           Q  D W      + G R+    ASDAY
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAY 863


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 435 QTPDAWCAQTSTKPGNRIAKYTASDAY 515
           Q  D W      + G R+    ASDAY
Sbjct: 837 QGEDRWLCTLLLQRGYRVEYSAASDAY 863


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,385
Number of Sequences: 336
Number of extensions: 2048
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)