Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    29   1.4  
At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domai...    27   7.7  

>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +1

Query: 76  PSDRGHLHRRR*SYAA*APQDPHHDY*TSNVGAARPRG 189
           PS   H H RR + AA A Q PHH   T+  G     G
Sbjct: 107 PSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAG 144


>At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 682

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 229 LRHSVLDVFS--LRDVPAAELLRRWTFSSRGADPAVPTPHTTSVGGANDRD 83
           + H+VL+     LR + A EL R  TFS+        T   T VGG N  D
Sbjct: 23  INHAVLNRRDALLRSLNAVELRRSRTFSAVRTSNFSVTAAATDVGGRNSTD 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,561,567
Number of Sequences: 28952
Number of extensions: 182192
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)