Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A08f
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.56 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   9.1  

>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 0.56
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 269 KMIQETKVNHLYHLPFMINLSNRFKLQGSQDIVHCF-VAGDSEV 141
           + I +T  NHL+  P   NL+  F +  +   +H F ++G +EV
Sbjct: 181 RQIHKTVRNHLFSPPLPSNLALSFSISNASVCLHLFRLSGPNEV 224


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 150 VPGNEAMDNVLGALKFESVTEINHERQMIQMIYFCFLNHFNKNSPIIALKLI 305
           +P  E   N+    +   ++    ++  + M    FLNH+     II LKL+
Sbjct: 211 LPPAERSSNLTIVFEKNWISHAKKKKSSLYMWGVLFLNHWKLTVVIIVLKLV 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,051
Number of Sequences: 5004
Number of extensions: 21011
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)