Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A08f
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0433 + 3282195-3285185                                           29   1.6  
12_01_0708 - 6137865-6140909                                           27   6.5  
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580...    26   8.6  
01_01_0430 + 3258438-3259200,3259929-3261454                           26   8.6  

>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 120 FCIMEYRYLRVPGNEAMDNVLGALKFESVTEINH 221
           F +   RYL + GN+   + L A  FE +TE+ H
Sbjct: 98  FSLTSLRYLNLGGNDFNASQLPATGFERLTELTH 131


>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 FCIMEYRYLRVPGNEAMDNVLGALKFESVTEINH 221
           F +   RYL + GN    + L    FE++TE+ H
Sbjct: 116 FRLTSLRYLDISGNNFSMSQLPVTGFENLTELTH 149


>11_05_0010 -
           18356835-18357080,18357475-18357672,18357780-18358046,
           18358870-18359067,18359151-18359417,18359524-18359724,
           18359807-18361363,18361499-18361859,18362602-18363467
          Length = 1386

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +3

Query: 174 NVLGALKFESVTEINHERQMIQMIYFCFLNHFNKNSPIIAL 296
           +V GALK E +  I H R   Q I F  L +FN  SP + L
Sbjct: 785 SVTGALK-ERLMIIGHSRGNGQAIAFQCLANFNFTSPAMML 824


>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 120 FCIMEYRYLRVPGNEAMDNVLGALKFESVTEINH 221
           F +    YL + GN+   + L A+ FE +TE+ H
Sbjct: 114 FSLTSLGYLNLGGNDFNASRLPAVGFERLTELTH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,497,295
Number of Sequences: 37544
Number of extensions: 117499
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)