Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A08f
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42645| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.54 
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_42645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 216 NHERQMIQMIYFCFLNHFNKNSPIIALKLINIL 314
           N  R+ ++M+ F  L H+    P I LKLIN++
Sbjct: 221 NKRRRTVRMLQFLVLMHYLCWGPTIVLKLINVI 253


>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 313 YFVQFNIIDNYFYWMXWIKY 372
           +FV F+ I NY  W+ ++ Y
Sbjct: 713 FFVNFDTIPNYMQWLTYVSY 732


>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 691

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 360 GHPIKIIIYNIKLHEIKY*LTSMQ*LVSFC 271
           G+P   I+YN+K  ++ Y L   Q +VS C
Sbjct: 224 GYPSDQIMYNLKSLDLSYTLIGDQGIVSIC 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,038,081
Number of Sequences: 59808
Number of extensions: 146799
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)