Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A08f
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z49968-8|CAE17875.1|  144|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu...    27   5.9  
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu...    27   5.9  
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu...    27   5.9  
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu...    27   5.9  
U23522-3|AAC46817.1|  432|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO...    27   5.9  
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR...    27   5.9  
AC024090-7|AAF35429.2|  294|Caenorhabditis elegans Hypothetical ...    26   7.8  

>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical protein
            T19A5.1 protein.
          Length = 1280

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 111  SWPFCIMEYRYLRVPGNEAMDNVLGALKFESVTEINHERQM 233
            SW  C++   Y RV GN   +N +G L+    T   H R +
Sbjct: 1156 SWVLCVLSSLYWRVTGN--AENAIGCLRCALHTAPPHMRDV 1194


>Z49968-8|CAE17875.1|  144|Caenorhabditis elegans Hypothetical
           protein M110.9 protein.
          Length = 144

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 147 RVPGNEAMDNVLGALKFESVTEINHE 224
           R P  E +D +LG+ + +++ +IN E
Sbjct: 20  RAPSTEVIDKILGSAETKTIEQINKE 45


>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
           guidance protein 7,isoform a protein.
          Length = 1144

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 218 INLSNRFKLQGSQDIVHCFVAG 153
           +N S+   LQG+Q  +HCF +G
Sbjct: 74  VNQSSPIALQGNQHKLHCFFSG 95


>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
           guidance protein 7,isoform d protein.
          Length = 1147

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 218 INLSNRFKLQGSQDIVHCFVAG 153
           +N S+   LQG+Q  +HCF +G
Sbjct: 74  VNQSSPIALQGNQHKLHCFFSG 95


>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
           guidance protein 7,isoform b protein.
          Length = 1328

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 218 INLSNRFKLQGSQDIVHCFVAG 153
           +N S+   LQG+Q  +HCF +G
Sbjct: 258 VNQSSPIALQGNQHKLHCFFSG 279


>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
           guidance protein 7,isoform c protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 218 INLSNRFKLQGSQDIVHCFVAG 153
           +N S+   LQG+Q  +HCF +G
Sbjct: 258 VNQSSPIALQGNQHKLHCFFSG 279


>U23522-3|AAC46817.1|  432|Caenorhabditis elegans Hypothetical
           protein W06B4.1 protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 195 FESVTEINHERQMIQMIYFCFLNHFNKNSPIIALKL 302
           F++V  + ++R ++QM   CF N++     +   KL
Sbjct: 261 FKTVFSMKNDRDLLQMNEICFSNYYKHRLALFTEKL 296


>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
           protein.
          Length = 1147

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 218 INLSNRFKLQGSQDIVHCFVAG 153
           +N S+   LQG+Q  +HCF +G
Sbjct: 74  VNQSSPIALQGNQHKLHCFFSG 95


>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
           protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 218 INLSNRFKLQGSQDIVHCFVAG 153
           +N S+   LQG+Q  +HCF +G
Sbjct: 258 VNQSSPIALQGNQHKLHCFFSG 279


>AC024090-7|AAF35429.2|  294|Caenorhabditis elegans Hypothetical
           protein C52E2.1 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 126 IMEYRYLRVPGNEAMDNVLGALKFESVTEINHERQMIQMIY 248
           ++E + LRV   +A    L  +KF+ VT +   R +    Y
Sbjct: 110 LLEVKQLRVSKEDATCGKLTGIKFKHVTMVERNRPIFDRFY 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,908,072
Number of Sequences: 27780
Number of extensions: 118646
Number of successful extensions: 261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)