Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A08f
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 242 HLYHLPFMINLSNRFKLQGSQDIVHCFVAG 153
           ++Y LPF+ ++  +  + G    V C VAG
Sbjct: 487 NVYGLPFIRHMDKKAIVAGETLRVTCPVAG 516


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 191 QGSQDIVHCFVAGDSEVSV 135
           +G    +HC V GD+ V+V
Sbjct: 821 KGDTATLHCEVHGDTPVTV 839


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 191 QGSQDIVHCFVAGDSEVSV 135
           +G    +HC V GD+ V+V
Sbjct: 817 KGDTATLHCEVHGDTPVTV 835


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 130 WNTDTSESPATKQ 168
           W +DTS+ P + Q
Sbjct: 223 WKSDTSDGPESHQ 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,038
Number of Sequences: 438
Number of extensions: 1633
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)