Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A08f
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ...    26   7.2  
At4g30130.1 68417.m04283 expressed protein contains Pfam domains...    26   7.2  
At3g23610.1 68416.m02970 dual specificity protein phosphatase (D...    26   7.2  
At2g37650.1 68415.m04618 scarecrow-like transcription factor 9 (...    26   7.2  
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I...    26   9.6  

>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
           protein similar to SP|Q9Y4I5 Tesmin
           (Metallothionein-like 5, testis-specific) {Homo
           sapiens}; contains Pfam profile PF03638:
           Tesmin/TSO1-like CXC domain
          Length = 408

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 260 QETKVNHLYHLPFMINLSNRFKLQGSQDIVHCF 162
           QE ++  ++   ++I LSNR ++ G+ DIV  F
Sbjct: 330 QERQILSIFR-DYLIQLSNRARINGNLDIVSLF 361


>At4g30130.1 68417.m04283 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 725

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 94  GLNRNLLGPSV*WNTDTSESPATKQWTMSWEP 189
           G+N N+  P +  +     SP   QW   W P
Sbjct: 139 GMNMNMNSPGLGSHNIPPPSPQNSQWDFFWNP 170


>At3g23610.1 68416.m02970 dual specificity protein phosphatase
           (DsPTP1) identical to DsPTP1 protein GI:4150963 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00782
           dual specificity phosphatase, catalytic domain
          Length = 198

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -3

Query: 272 VKMIQETKVNHLYHLPFMINLSNRFKLQGSQDIVHCFVAGDSEVSV 135
           V+++ +   N   +    ++  +  K QG   +VHCFV     V++
Sbjct: 100 VRVVDKEDTNLEMYFDECVDFIDEAKRQGGSVLVHCFVGKSRSVTI 145


>At2g37650.1 68415.m04618 scarecrow-like transcription factor 9
           (SCL9) identical to cDNA  scarecrow-like 9 (SCL9) mRNA,
           partial cds GI:4580524
          Length = 718

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 251 KVNHLYHLPFMINLSNRFKLQG 186
           KV+  YH  F+I+  NR+ LQG
Sbjct: 679 KVHTFYHKDFVIDQDNRWLLQG 700


>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
           (IGPS) nearly identical to SP|P49572
          Length = 402

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 196 NFRAPKTLSIASLPGTLRYLYSIIQKGQEDSGSV 95
           NFRAP   SI +    L+   ++     ED G+V
Sbjct: 42  NFRAPSQFSIRAQQSDLKESLAVSSSSVEDKGNV 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,300,968
Number of Sequences: 28952
Number of extensions: 101443
Number of successful extensions: 237
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)