Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.32 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   1.3  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    27   1.3  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    25   5.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   6.8  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.0  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
 Frame = -2

Query: 517 QDRHDSFHLELQEQQDGKQELLL*EAASFTVLVVLREFNIESPVGSVRDLRVLEHK--LR 344
           +D +    ++ QEQ + K+ LLL E   FT   +L  +N +S +  + +L+ L+ K  L 
Sbjct: 8   KDENVEMDIDPQEQNE-KKPLLLDELTKFT---ILHPYNYDSHIKLIEELKRLDKKKELS 63

Query: 343 QFKLEFVGVQNPRHPIIDD-FVDVCLVQCPPRFRSNTDFV 227
           + +  F  +     P+ +D +VD  L +C    R+  D+V
Sbjct: 64  EARKTFQSI----FPLSEDLWVDYLLDEC-KNCRTLDDYV 98


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 466  KQELLL*EAASFTVLVVLREFNIESPVGSVRDLRVLEHKLRQFKLE 329
            KQE L+ +  S   L  L  + + S  G++RDL ++E KL Q  ++
Sbjct: 890  KQEKLVDKKESELSLSKLFLYAVPSNSGNIRDLVLVEQKLEQLHIQ 935


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 250 IGEGIGRDKHRQSHL*SGGEDFGHQRIQV*TA--GVYVPKRAGL 375
           +G G+G ++H Q++L    +    Q+  V T   G+Y+P   G+
Sbjct: 382 LGHGLGLEEHEQTYLNPANKGTPVQKGNVFTVEPGIYIPDEIGI 425


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 334 LEFVGVQNPRHPIIDDFVDVCLVQCPPRFRSNTD 233
           ++FVG+ +  HP   D  D   V CP  F  + D
Sbjct: 152 IDFVGIASC-HPSFPDSADAANVHCPVLFLCSKD 184


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 11  PYLMTK*LTKMNRVCILLASVAIATSYSIKDNEIELPRLRTSDDLLDSVISDCFEAGSPM 190
           P   +K LT+      ++ +++     S+   E  +P +     + + + +DCF A    
Sbjct: 770 PVATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDCFTALEYF 829

Query: 191 ACLKVKVLSY 220
            CLKV  LSY
Sbjct: 830 KCLKVLNLSY 839


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 483 KSSRTGSRSFFFKRPRASPFSLFSGNS 403
           +SSR   + +++K+PRA P S  SG+S
Sbjct: 535 RSSRRVHKQYYWKKPRARPRS--SGHS 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,853
Number of Sequences: 5004
Number of extensions: 37286
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)