Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0461 - 3328662-3329087,3329124-3329201,3329370-3329597,333...    28   4.0  
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31...    28   4.0  
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178...    27   9.1  
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378...    27   9.1  

>02_01_0461 -
           3328662-3329087,3329124-3329201,3329370-3329597,
           3330181-3330204
          Length = 251

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 428 RSRCSQGIQYRIPCRLCKRPARFGT*TPA 342
           +SRCS+ ++    CR+C+   + GT T A
Sbjct: 147 KSRCSRTVKDETSCRICQTRGQLGTNTRA 175


>02_01_0046 -
           311752-312138,312220-312372,312458-312653,312702-312792,
           312808-313228
          Length = 415

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 327 NSSLNCRSLCSKTRRSLTEPTGDSIL-NSLRTTRTVKL 437
           N SLN ++LC +T R   +   DSIL N L T + +KL
Sbjct: 25  NLSLNFKTLCPRTSRGNFKCKIDSILRNHLGTAKILKL 62


>10_08_0654 -
           19616426-19616656,19617046-19617249,19617654-19617824,
           19619617-19620411
          Length = 466

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 361 LEHKLRQFKLEFVGVQNPRHPIIDDFVDVCLVQCPPRFRSNTDFV 227
           L+   R++KL FV + +P HP    F   CL   P     + +FV
Sbjct: 179 LQRAQREYKLLFVYLHSPDHPDTPAFCGGCLCAEPVAAFIDENFV 223


>03_01_0502 -
           3779551-3779562,3779863-3780012,3780129-3780172,
           3780256-3780319,3780422-3780655,3780765-3780908,
           3781027-3781221,3781447-3781522,3781689-3781788,
           3781955-3781988,3782076-3782160,3782226-3782290,
           3782380-3782478,3782810-3782875,3785485-3785721
          Length = 534

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 50  VCILLASVAIATSYSIKDNEIELPRLRTSDDLLDSVISDCFE-AGSPMACL 199
           VCI +A+ A+ + +S+KD    + +  T+D  + +V    F   G P+A L
Sbjct: 397 VCIAMAATALISFWSLKDFHGTVQKAITADKSIKAVCLVLFAFLGVPLAVL 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,573
Number of Sequences: 37544
Number of extensions: 276663
Number of successful extensions: 909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)