Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)                   28   5.4  
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        28   5.4  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_24451| Best HMM Match : BRF1 (HMM E-Value=7.4)                      27   9.4  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            27   9.4  

>SB_13459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 35  TKMNRVCILLASVAIATSYSIKDNEIELPRLRTSDDLL 148
           T +  VC+L+  +AIA ++S+       P LRT+ ++L
Sbjct: 13  TSLTTVCVLVVLLAIAGNFSLLLTLYRTPSLRTNPNIL 50


>SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)
          Length = 225

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 321 VSKILATRS*MTLSMFVSSNALPDSDPTPTLSSRYDRTFTLRHAMGDPASKQS 163
           V++++ T    T +  V    LPDSDP P L S      T    +G  A  QS
Sbjct: 125 VNQVMTTGRPRTTTRPVQRQDLPDSDPAPLLVSCRRLPVTSTDVIGTIAHAQS 177


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 442  AASFTVLVVLREFNIESPVGSVRDLRVLEHKLRQFKLEFVGVQNPR 305
            A+S   L+V ++ N   P+G +RD+   E    +F + F G  NP+
Sbjct: 2013 ASSQAKLLVKKKGNRPQPIGMIRDIEGYEGGQARFDVHFTG--NPK 2056


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +3

Query: 159  SVIVSKPDRPWHASK*KFYHIWTTKSVLDRNRGGHWTRQTSTKSSMIGWRGFWTPTNSSL 338
            SV++  P   W     +    WT K +L   R G     +     +  W G  T T+S +
Sbjct: 944  SVLLEGPVEAWLCDVERSMR-WTLKELLKHCRLGLKKSLSKRDKWVKEWPGQLTITSSQM 1002

Query: 339  NCRSLCSKTRRSLTEPTGDSILNSLR 416
               S C+K   S  E      L SL+
Sbjct: 1003 QWTSDCNKALSSSKERGDKKALKSLK 1028


>SB_24451| Best HMM Match : BRF1 (HMM E-Value=7.4)
          Length = 372

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 74  AIATSYSIKDNEIELPRLRTSDDLLDSVISDCFE 175
           A+ T+  IK+NE    ++ T DD L S  S+  E
Sbjct: 267 AVDTNVEIKENEAFFEKIETPDDFLSSSESESEE 300


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 101 DNEIELPRLRTSDDLLDSV-ISDCFEAGSPMACLKVKVLSYLDD 229
           D E + P++    D LD   +S+C   GS    L+    S+LDD
Sbjct: 250 DYEPKTPKILLEKDCLDDAKVSNCLPMGSSSTALEQCSDSFLDD 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,326
Number of Sequences: 59808
Number of extensions: 299181
Number of successful extensions: 897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)