Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U00047-6|AAA50692.1|  279|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical...    29   2.7  
Z49910-5|CAA90120.1|  411|Caenorhabditis elegans Hypothetical pr...    27   6.2  
CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical
           protein F13G3.3 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 187 HGM--PQSESSIISGRQSRCWIGIGE 258
           HGM  P  E   IS  ++RCWI +GE
Sbjct: 448 HGMLCPGPERCDISNHKTRCWISVGE 473


>U00047-6|AAA50692.1|  279|Caenorhabditis elegans Hypothetical
           protein ZK418.8 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 257 RALDETNIDKVIYDRVARILDTNEFKFKLPEFMFQNAQVSYRADRG 394
           RA DE  + K++  R+A I+D  +  +K  EF  +   V Y   RG
Sbjct: 138 RATDEQCV-KLVRLRIAEIIDNVQKPWKTAEFEVETQMVGYLVGRG 182


>AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical
           protein R07C3.4 protein.
          Length = 723

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 251 SGRALDETNIDKVIYDRVARILDTNEFKFKLPEFMFQNAQVSYRADRGFDIEFPE 415
           +G+A  +T +DK I  ++  IL  N  +F +P     N+ + + A   F IE  E
Sbjct: 420 TGKATRDTLVDKYILHKIQMILGPNIKQFLIPAAKTDNSSMRF-ARGAFGIEILE 473


>Z49910-5|CAA90120.1|  411|Caenorhabditis elegans Hypothetical
           protein F44G4.4a protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 418 QRER*SSRPLKEEAPASRPAALEAQDESY 504
           +R+R   RP++ EAP   P     QD SY
Sbjct: 361 ERDRPDRRPIQNEAPLPMPFVRPPQDYSY 389


>CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical
           protein C50E10.11 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -2

Query: 433 FTVLVVLREFNIES--PVG--SVRDLRVLEHKLRQFKLEFVGV 317
           FT L +LREF+  S  PV   ++ +LRV +  LR F + F+G+
Sbjct: 217 FTNLRILREFDRNSMLPVRFQAMENLRVFDLTLRIFLVGFIGI 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,710,064
Number of Sequences: 27780
Number of extensions: 217949
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)