Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.97 
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   2.2  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    25   5.2  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   5.2  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   5.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    25   5.2  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   6.8  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 368 LECCFLFISFFGLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIRFS 231
           L C F+F +  G+ +  L CLL    +  +   + +L+  +GI F+
Sbjct: 19  LPCLFIFAAIVGMNLSLLYCLLKGWKNVMIWGIETMLFGAIGIFFA 64


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 365 ECCFLFISFFGLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIRFSL 228
           E   L +S    + D L  LL FL+ C     KR ++ ++G  FSL
Sbjct: 178 EASCLVLSRLFSRDDGLDLLLGFLHHCESSWFKRSIFYKIGCLFSL 223


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 271 CFCTKQEYRKFNKQRS*SI*RPKNE 345
           C C++  Y  FN  RS     PKNE
Sbjct: 152 CSCSQFSYNAFNSSRSFDEPMPKNE 176


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -3

Query: 321 SASLLVEFSVFLFRAKTQTPSLH*NGNSVFITLPSLSFTA-HGFQKRKIYGCT-NRCHKN 148
           S SL+ +    L + ++Q PSL    NS+  +LP +S T   G      Y    N   + 
Sbjct: 334 SKSLVAKNDQQLLQRQSQEPSLILRANSMKASLPDISNTGISGMNTNTTYNTNINNTPQT 393

Query: 147 KSSGIMKHGTQTI 109
             SGI +  + +I
Sbjct: 394 AISGITQDTSPSI 406


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 190 LESMGCKRQGRQRNENRIPISM*RRRLCFCTKQEYRKFNKQRS 318
           LES    +Q  +RNE      +  +RLC   + EY +   + S
Sbjct: 170 LESEAIIKQNEERNEEMFQSLIEDKRLCSQVRTEYDRIRMEAS 212


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 97 LFFRFYYICTFRNVLIIPNFVFFTI 23
          LFFR +++C+F   L+  +F+F T+
Sbjct: 17 LFFRLFFVCSFFFPLLY-SFIFATL 40


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 447 FKMFIP*AIIS*LVFEPL--NYYSKQVGLGVLFSFYFVFWSSD 325
           F  F+P  II  L F  L  NY +  V +  + SF FV W SD
Sbjct: 306 FSSFLP-VIIKGLGFVGLQTNYMTIPVYIAGVISFLFVAWLSD 347


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +2

Query: 194 NPWAVKDKDGNVMKTEFPFQCKEGVCVFARNKNTENSTSNEADQSED 334
           N W+ K  D  ++   +   C+E   +  + KN E    N     +D
Sbjct: 108 NEWSKKTNDAQILLNSYETFCEEEALIEEKLKNIEIFEKNFVIMDDD 154


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 424 GLRYKHFEATVHDSLFFNYS 483
           G++Y+H+  T    LF NY+
Sbjct: 284 GMKYRHYSPTAKVLLFVNYT 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,437
Number of Sequences: 5004
Number of extensions: 49189
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)