Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    35   0.034
02_05_1176 + 34715527-34715614,34716726-34716742,34717613-347176...    28   5.2  

>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = -1

Query: 368 LECCFLFISFF--GLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIR-FSLRCRPCLLQPM 198
           L  C L++S F    +I++ R +  ++   F+ + + L   E+G R F+     CL+QP+
Sbjct: 323 LRACLLYLSIFPEDYEINKQRLINRWIAEGFILEEQGLTSYEVGERYFNYLINRCLIQPV 382

Query: 197 DSRSVKYTAAQIDAI 153
            S+  +  A Q+  I
Sbjct: 383 GSKHGQAKACQVHGI 397


>02_05_1176 +
           34715527-34715614,34716726-34716742,34717613-34717696,
           34718001-34718207
          Length = 131

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +1

Query: 115 LCSMFHYTTTFVFMAS----ICAAVYFTLLES 198
           LC M HYT+ F F+AS     C  +Y+ + E+
Sbjct: 8   LCLMPHYTSRFYFVASYYAIACGTIYYKMDEN 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,779,782
Number of Sequences: 37544
Number of extensions: 252542
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)