Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               29   2.3  
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   28   5.4  
SB_33071| Best HMM Match : PQ-loop (HMM E-Value=3.2e-14)               28   5.4  
SB_8564| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_44339| Best HMM Match : Leu_leader (HMM E-Value=2.4)                27   9.4  

>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +2

Query: 128 FIIPLLLFLWHRFVQPYILRFWNPWAVKDKDGNVMKTEFPFQCKEGVCVFARNKNTENST 307
           F++P+ + L + F+  +    W+  AV+ K     +      CK G+     N+N  N  
Sbjct: 569 FLLPVAIILLYNFIALFHT-MWHIRAVRKKVPLTERVAVLVSCKMGIDNNNNNENNNNDK 627

Query: 308 SNEADQSED 334
            ++ D  +D
Sbjct: 628 DDDIDDDDD 636


>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 524

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 87  RKNNYK*IWFVFHVSLYHYFCFYGIDLCSRIFYASGIHG 203
           R  N+   W +F +    YF F  +    R+FY SGI G
Sbjct: 288 RVANHSTYWVLFELIWRDYFKFVCLKYGDRVFYRSGIMG 326


>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 203 AVKDKDGNVMKTEFPFQCKEGVCVFARNKNTENSTSNEADQSEDQKTK*KEN 358
           +V+ +D   MK E     K    V  + KN ++ T N  D++++ K K KEN
Sbjct: 369 SVEREDSMAMKEE--LHSKGTNTVKNKTKNKKDKTKNNKDKTKENKDKTKEN 418


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 123 HVSLYHYFCFYGIDLCSRIFYASG 194
           H +++HY CFYG+    R F + G
Sbjct: 46  HNTIFHYACFYGMKPFIRDFLSEG 69


>SB_33071| Best HMM Match : PQ-loop (HMM E-Value=3.2e-14)
          Length = 125

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 167 VQPYILRFWNPWAVKDKDG 223
           V PYI ++W+ W  +D DG
Sbjct: 6   VVPYIPQYWDIWRTRDADG 24


>SB_8564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 114 TIFIYNYFFGSITY 73
           +IF+ NYFFG ITY
Sbjct: 109 SIFVNNYFFGDITY 122


>SB_44339| Best HMM Match : Leu_leader (HMM E-Value=2.4)
          Length = 493

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -3

Query: 240 SVFITLPSLSFTAHGFQKRKIYGCTNRCHKNKSSGIMKHGTQTIFIYNYFFGSITY 73
           ++ +T+P  S T HG Q+     C          G + HG Q   +     GSIT+
Sbjct: 145 ALLLTVPKGSIT-HGAQRLYYSRCLKALILTVRKGFITHGAQKALLLTVRKGSITH 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,443
Number of Sequences: 59808
Number of extensions: 329024
Number of successful extensions: 837
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)