Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73290.1 68414.m08481 serine carboxypeptidase S10 family prot...    29   1.9  
At3g48540.1 68416.m05300 cytidine/deoxycytidylate deaminase fami...    28   3.3  
At2g47820.1 68415.m05968 expressed protein                             28   3.3  
At4g15300.1 68417.m02342 cytochrome P450 family protein similar ...    28   4.4  
At3g42450.1 68416.m04397 zinc knuckle (CCHC-type) family protein...    28   4.4  
At1g43570.1 68414.m05001 hypothetical protein                          28   4.4  
At5g05990.1 68418.m00664 mitochondrial glycoprotein family prote...    27   7.7  
At4g38100.1 68417.m05381 expressed protein                             27   7.7  

>At1g73290.1 68414.m08481 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P07519) [Hordeum vulgare]; glucose acyltransferase
           GB:AAD01263 [Solanum berthaultii]; contains Pfam
           profile: PF00450 Serine carboxypeptidase;
          Length = 438

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 155 WHRFVQPYILRFWNPWAVKDKDGNVMKT 238
           W R +   I+  W PW +KD+ G   KT
Sbjct: 374 WVRSLNYSIIDNWRPWMIKDQIGGYTKT 401


>At3g48540.1 68416.m05300 cytidine/deoxycytidylate deaminase family
           protein similar to SP|P32321 Deoxycytidylate deaminase
           (EC 3.5.4.12) (dCMP deaminase) {Homo sapiens}; contains
           Pfam profile PF00383: Cytidine and deoxycytidylate
           deaminase zinc-binding region
          Length = 232

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 197 PWAVKDKDGNVMKTEFPFQC 256
           PWA K + G+ ++T++P+ C
Sbjct: 119 PWAKKSRTGDPLETKYPYVC 138


>At2g47820.1 68415.m05968 expressed protein
          Length = 805

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 208 KRQGRQRNENRIPISM*RRRLCFCTKQEYRKFNKQRS*SI*RPKNEIKRKQHSK 369
           ++ GR RN   +P+   R  L  CT +E   F + +S    R K  +K+ +H +
Sbjct: 557 RKGGRPRNPKLLPVCTKRSSLADCTLREAGCFGETQS----RKKKPLKKGKHMR 606


>At4g15300.1 68417.m02342 cytochrome P450 family protein similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; contains Pfam profile: PF00067:
           Cytochrome P450
          Length = 487

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +2

Query: 137 PLLLFLWHRFVQPYILRFWNPWAVKDKDGNVMKTEFPFQCKEGVCVFA 280
           P + F   ++  PY    W  W  KD    V KT  PF     +CV A
Sbjct: 390 PHIHFNSEKYEDPYAFNPWR-WEGKDLGAIVSKTFIPFGAGRRLCVGA 436


>At3g42450.1 68416.m04397 zinc knuckle (CCHC-type) family protein
           contains Pfam profile PF00098: Zinc knuckle
          Length = 253

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 314 RCL-LNFLYSCFVQKHKRLLYIEMGIRFSLRCR 219
           +CL  N LY+ FV  HK L Y      F +RCR
Sbjct: 169 KCLDANNLYAKFVDNHKGLAYESTIGYFQMRCR 201


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 104 INMVCVPCFIIPLLLF---LWHRFVQPYILRFWNPWAVK 211
           IN VC    I  LL     LW ++VQ Y++R  N WA+K
Sbjct: 106 INTVCGLKLIWRLLASQTSLWGQWVQTYLIRRNNFWAIK 144


>At5g05990.1 68418.m00664 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SUAPRGA1
           [Emericella nidulans] GI:6562379; contains Pfam profile
           PF02330: Mitochondrial glycoprotein
          Length = 259

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 284 NKNTENSTSNEADQSEDQKTK*KENNTP 367
           +++ E    NE D+ ED+  K K++N P
Sbjct: 130 DEDDEEEAENEEDEDEDKPLKPKQSNVP 157


>At4g38100.1 68417.m05381 expressed protein
          Length = 193

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 239 EFPFQCKEGVCVFARNKNTENSTSNEADQSEDQKTK 346
           EF  + ++GV V A  KN    +++EA Q+ED++T+
Sbjct: 71  EFGVEDRDGVVVAAEEKN----SNSEAPQAEDEETQ 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,264,062
Number of Sequences: 28952
Number of extensions: 234343
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)