Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306A05f
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 103 1e-23
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 81 6e-17
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 81 6e-17
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 81 6e-17
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 81 6e-17
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 81 6e-17
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 2e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 32 0.036
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 28 0.78
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 5.5
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 7.3
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 7.3
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 24 9.6
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 103 bits (247), Expect = 1e-23
Identities = 49/76 (64%), Positives = 57/76 (75%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
MLIKVKTLTGKEIE+DI+P D GIPP QQRLI++GKQM D+K A+ Y
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 328 VQGGSVLHLVLALRGG 375
++GGSVLHLVLALRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 148 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDEKTAQDYK 327
M I VKTLTGK I +++E +D GIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 328 VQGGSVLHLVLALRGG 375
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.9 bits (89), Expect = 2e-04
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +1
Query: 253 IPPQQQRLIFSGKQMNDEKTAQDYKVQGGSVLHLVLAL 366
I ++QRLI++G+ + DE++ + YK+Q G +HLV L
Sbjct: 39 IEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 32.3 bits (70), Expect = 0.036
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 175 GKEIEIDIEPTDXXXXXXXXXXXXXGIPPQQQRLIFSGKQMNDE 306
GK+ +++IEP + +PP++Q++I G Q+ D+
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDD 53
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.9 bits (59), Expect = 0.78
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +1
Query: 262 QQQRLIFSGKQMNDEKTAQDYKVQ 333
++Q+LI+SG+ + D+KT +Y ++
Sbjct: 40 ERQKLIYSGRILADDKTVGEYNIK 63
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 324 QSSGRFSTSSCFGFKGRRMIWLVIIFLCIYKIKFYFSLHI 443
QS G F T G ++ +++ LCIY FY S+ +
Sbjct: 367 QSQGHF-TEVLNGIGTILLVLVILTLLCIYTAAFYRSVRL 405
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 256 PPQQQRLIFSGKQMNDEKTAQDYKVQGGSVLHL 354
P + + I SGK D K D K QGG + L
Sbjct: 102 PVFELKEILSGKYGEDSKLIYDLKDQGGELCSL 134
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 284 QENK*MMRRQLKITKFREVQYFILFWL 364
+EN + ++K+TK + + +LFWL
Sbjct: 35 EENDSVDNEEIKLTKEKHEKLLLLFWL 61
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 409 IQRKIITSQIIRLPLKPKQDEVLNLPELCNLEL 311
+ R++ TS I+ PKQ +N+ E +LEL
Sbjct: 92 VPRELQTSPIVSPTTSPKQTPSINVTEPQDLEL 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,328
Number of Sequences: 5004
Number of extensions: 27646
Number of successful extensions: 69
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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