Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   3.0  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   3.0  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   5.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.2  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 353 KYFTSRKVKRIYDDHGHIAETGKDLCDCLDEKCP 454
           +YF     K  Y D  HI    K+ C C  +K P
Sbjct: 148 EYFEDDYFKNTYFDKTHIDHKCKEHCSCHHDKFP 181


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 311 DQNYLRNASFKKYMLQTQNNIKKIFSSAR 225
           DQNYL N S K      + N +K F SAR
Sbjct: 46  DQNYLLNNSNKNKGSIIEENTRKPFQSAR 74


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = +3

Query: 309 ILKIQLVNVEKQTGKNISLLEK*REFMMTTVILLKLAK---TCVIASMRSVPDAI----- 464
           ++ + LVN+ K       LL++  EF+  T+++L LA      +      V  A      
Sbjct: 76  LIPLLLVNIAKYWKGKPPLLKRRMEFIWITLLILALAVGGFAYIDVDRNLVQGAAMKIFS 135

Query: 465 FHVQTAIPINVAM 503
           F  QTA+PI++A+
Sbjct: 136 FTFQTALPISIAI 148


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 341 LFYVHELNF*DQNYLRNASFKKYMLQTQNNIKKIFSSARYYP 216
           L + H L F D     N   K+ ++ T+N+++ +  S +Y P
Sbjct: 140 LNFYHSLGF-DLETAENTGNKRVIIHTENDLQTVQISNKYSP 180


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 411 KLAKTCVIASMRSVPDAIFHVQTAIPINVAMSAELQK 521
           K + TC I    ++ D+   ++T +P+N A+  E  K
Sbjct: 769 KQSSTCTINFPLALWDSRLRIETKVPLNDAILTEFSK 805


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,964
Number of Sequences: 5004
Number of extensions: 34932
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)