Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235...    28   4.0  
03_06_0499 - 34354040-34354528                                         28   4.0  
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    28   5.2  
09_04_0243 - 15975483-15975704,15976003-15976060,15976875-159772...    27   6.9  

>09_04_0476 -
           17922072-17922469,17922546-17923241,17923405-17923569,
           17923670-17924105,17924314-17924739
          Length = 706

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 371 KVKRIYDDHGHIAETGKDLCDCLDEKCPGCHFPCAN-CNSNKCGHEC 508
           K  + +D + +I +  KD+ +CLD       +PCA  C +   G++C
Sbjct: 271 KCSKGFDGNPYIKDGCKDINECLDNTT----YPCAGLCQNTMGGYDC 313


>03_06_0499 - 34354040-34354528
          Length = 162

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 389 DDHGHIAETGKDLCDCLDEKCPGCHFPCANC 481
           D+ G   ++    C C+D +  GCH  C +C
Sbjct: 101 DNCGGCTKSIPPQCQCMDARPAGCHPACKSC 131


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 296 LDNFDPKNSARERRKANRKKYFTSRKVKRIYDD 394
           LD  DP+ S   + + NRKKY  +++ KR+  D
Sbjct: 348 LDFVDPRGSQPRKMRMNRKKY--AQRPKRVQQD 378


>09_04_0243 -
           15975483-15975704,15976003-15976060,15976875-15977287,
           15977530-15977538
          Length = 233

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 431 HTSLCQFQQYDRGHHKFSSLFEK 363
           H S+C+F++  RG  + S+L EK
Sbjct: 145 HASVCEFEKELRGEQQMSALIEK 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,043
Number of Sequences: 37544
Number of extensions: 198444
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)