Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)             68   4e-12
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_10726| Best HMM Match : DUF636 (HMM E-Value=3.3)                    29   3.1  
SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)                      28   5.4  
SB_43702| Best HMM Match : SERTA (HMM E-Value=0.034)                   27   7.1  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   27   7.1  
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   7.1  

>SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 187

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 40/97 (41%), Positives = 47/97 (48%), Gaps = 25/97 (25%)
 Frame = +2

Query: 296 LDNFDPKNSARERRKANR-------KKYFTSRKVKRI------------------YDDHG 400
           L  F+P  S RE+RK N+       KK  TSR+  R                   +D  G
Sbjct: 70  LSGFNPDRSRREQRKVNQFVEKTLQKKEHTSRRADRNGAAGTKRRKRTPPSKQARHDRSG 129

Query: 401 HIAETGKDLCDCLDEKCPGCHFPCANCNSNKCGHECR 511
                GKD+CDC D  CPGCHFPC+ C S KCG ECR
Sbjct: 130 VRLSDGKDVCDCQDLNCPGCHFPCSACGSEKCGVECR 166


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +2

Query: 434 CLDEKCPGCHFPCA---NCNSNKCGHEC 508
           C D KCP C   C    NC ++KC  +C
Sbjct: 293 CCDGKCPPCEQTCGRTLNCKNHKCPSQC 320


>SB_10726| Best HMM Match : DUF636 (HMM E-Value=3.3)
          Length = 248

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 428 CDCLDEKCPGCHFPCANCNSNKCGHECRI 514
           C+C ++K    H PCA CN      +  I
Sbjct: 10  CNCTEKKYRHVHCPCATCNGRATDRKTEI 38


>SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)
          Length = 476

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 362 TSRKVKRIYDDHGHIAETGKDLCDCLDEKCPGCHF-PCANCNSNKC 496
           T++K +   D   HI     D C C   KC   +  PC  C +NKC
Sbjct: 195 TTKKCETSCDGGKHI-----DKCTCDKSKCGETNDEPCKKCQTNKC 235


>SB_43702| Best HMM Match : SERTA (HMM E-Value=0.034)
          Length = 351

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 326 RERRKANRKKYFTSRKVKRIYDDHGHIAETGKDLCDCLDE 445
           R R +   ++YFT+R  KR+   H + A+  + + D LD+
Sbjct: 45  RLRCEIENERYFTARPAKRLKMSHENKADIEEKVPDVLDK 84


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 514 NSALMATFIGIAVCTWKMASGT 449
           NSA+ A F    V  WKMASGT
Sbjct: 718 NSAIAAVFGEPLVVNWKMASGT 739


>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 651

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 520 FCNSALMATFIGIAVCTWKMASGTLLIEAITQVFAS 413
           FC  A++A  + IA  +W +  G  +   I +VF++
Sbjct: 603 FCGLAILAFTLAIASFSWMLVEGINVYNKIVKVFST 638


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,490
Number of Sequences: 59808
Number of extensions: 255160
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)