Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-3|AAK18862.2|  201|Caenorhabditis elegans Hypothetical pr...    53   1e-07
U32305-2|AAZ82852.1|  204|Caenorhabditis elegans Hypothetical pr...    53   1e-07
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      29   2.0  
Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z83122-11|CAB05603.2|  648|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z81073-10|CAB03035.2|  648|Caenorhabditis elegans Hypothetical p...    27   6.2  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    27   6.2  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC006696-7|AAF39988.1|  140|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC006696-6|AAF39986.1|  141|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC006696-5|AAF39987.1|  141|Caenorhabditis elegans Hypothetical ...    27   6.2  

>U32305-3|AAK18862.2|  201|Caenorhabditis elegans Hypothetical
           protein B0336.5a protein.
          Length = 201

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
 Frame = +2

Query: 290 RFL-DNFDPKNSARERRKANRKKYFTSRKVKRIYDDHGHIAETGK------DLCDCLDEK 448
           RFL D+ D  ++ R +R A  K+    R     +D  G ++ T K      DLCDCL  +
Sbjct: 86  RFLPDSVDIISTNRSKRVAAEKQA-DLRDEPLHHDKTGKLSVTAKGQTLFFDLCDCLVVE 144

Query: 449 CPGCHFPCANCNSNKCGHECR 511
           C GCH+PC  C S KC   CR
Sbjct: 145 CDGCHWPCKQCKSRKCLIGCR 165


>U32305-2|AAZ82852.1|  204|Caenorhabditis elegans Hypothetical
           protein B0336.5b protein.
          Length = 204

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
 Frame = +2

Query: 290 RFL-DNFDPKNSARERRKANRKKYFTSRKVKRIYDDHGHIAETGK------DLCDCLDEK 448
           RFL D+ D  ++ R +R A  K+    R     +D  G ++ T K      DLCDCL  +
Sbjct: 89  RFLPDSVDIISTNRSKRVAAEKQA-DLRDEPLHHDKTGKLSVTAKGQTLFFDLCDCLVVE 147

Query: 449 CPGCHFPCANCNSNKCGHECR 511
           C GCH+PC  C S KC   CR
Sbjct: 148 CDGCHWPCKQCKSRKCLIGCR 168


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 434 CLDEKCPGCHFPCANCNSNKC 496
           CLD+KC G      +CN+ KC
Sbjct: 831 CLDDKCDGDDLEKESCNTQKC 851


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 434 CLDEKCPGCHFPCANCNSNKC 496
           CLD+KC G      +CN+ KC
Sbjct: 831 CLDDKCDGDDLEKESCNTQKC 851


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 434 CLDEKCPGCHFPCANCNSNKC 496
           CLD+KC G      +CN+ KC
Sbjct: 831 CLDDKCDGDDLEKESCNTQKC 851


>Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical
           protein F11A10.3 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +2

Query: 302 NFDPKNSARERRKANRKKYFTSRKVKRIYDD---HGHIAETGKDLCDCLDEKCPGCHFPC 472
           NF P +S  +RR+     YF   K   + +D    G+I +    + DC+   C  C    
Sbjct: 274 NFGPISSINQRRRDEMMAYFP--KANFLAEDGVPKGYIVD-ATTIIDCMHTFCKSCLLTY 330

Query: 473 ANCNSNKC 496
              ++N C
Sbjct: 331 FESDNNTC 338


>Z83122-11|CAB05603.2|  648|Caenorhabditis elegans Hypothetical
           protein F30F8.8 protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -2

Query: 379 LHFSRSEIFFPVCFSTFTS*IFRIKII*ETHLLKSTCYKHKIILKKY 239
           + F+R +IF P CFS F   ++++ +I +   L++  + H +   K+
Sbjct: 128 IFFNRFKIFIPECFSEF---VYQLSLIEDAMTLRANEHVHILRENKF 171


>Z81073-10|CAB03035.2|  648|Caenorhabditis elegans Hypothetical
           protein F30F8.8 protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -2

Query: 379 LHFSRSEIFFPVCFSTFTS*IFRIKII*ETHLLKSTCYKHKIILKKY 239
           + F+R +IF P CFS F   ++++ +I +   L++  + H +   K+
Sbjct: 128 IFFNRFKIFIPECFSEF---VYQLSLIEDAMTLRANEHVHILRENKF 171


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 314 KNSARERRKANRKKYFTSRKVKRIYDDHGHIAET-GKDLCDC--LDEKCPGCHFPC 472
           K +  ++R    K+ +  +K+K + + H  ++E   +D C+   LD++CPG  + C
Sbjct: 64  KKNLTDQRCPGTKENYGCKKIKDL-NCHSKLSEQDSEDRCNSSVLDQRCPGTSWYC 118


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 434 CLDEKCPGCHFPCANCNSNKCGHECRITE 520
           C    C GC      CN N CG +  + +
Sbjct: 29  CFGGNCGGCSGNNCGCNGNNCGPQVTVVQ 57


>AC006696-7|AAF39988.1|  140|Caenorhabditis elegans Hypothetical
           protein W08E12.3 protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 434 CLDEKCPGCHFPCANCNSNKCGHECRITE 520
           C    C GC      CN N CG +  + +
Sbjct: 37  CFGGNCGGCSGNNCGCNGNNCGPQVTVVQ 65


>AC006696-6|AAF39986.1|  141|Caenorhabditis elegans Hypothetical
           protein W08E12.4 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 434 CLDEKCPGCHFPCANCNSNKCGHECRITE 520
           C    C GC      CN N CG +  + +
Sbjct: 37  CFGGNCGGCSGNNCGCNGNNCGPQVTVVQ 65


>AC006696-5|AAF39987.1|  141|Caenorhabditis elegans Hypothetical
           protein W08E12.5 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 434 CLDEKCPGCHFPCANCNSNKCGHECRITE 520
           C    C GC      CN N CG +  + +
Sbjct: 37  CFGGNCGGCSGNNCGCNGNNCGPQVTVVQ 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,065
Number of Sequences: 27780
Number of extensions: 200391
Number of successful extensions: 713
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)