Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A03f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D57350 Cluster: PREDICTED: hypothetical protein;...    41   0.015
UniRef50_UPI0000DB7786 Cluster: PREDICTED: hypothetical protein;...    36   0.43 

>UniRef50_UPI0000D57350 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 289

 Score = 41.1 bits (92), Expect = 0.015
 Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 160 AKKEAVIEK-KNRKNKAGAEVEKPADFDDGNWE 65
           A K  VIE+ KN+KN      EKP DFDDGNWE
Sbjct: 118 ANKNKVIEEVKNKKNLKKFLSEKPVDFDDGNWE 150


>UniRef50_UPI0000DB7786 Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 293

 Score = 36.3 bits (80), Expect = 0.43
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 163 LAKKEAVIEKKNRKNKAGAEVEKPADFDDGNWE 65
           + K+  + + KN+KN      EKP DFD+G+WE
Sbjct: 127 VGKENKIEQVKNKKNLKNLFQEKPIDFDEGDWE 159


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,380,189
Number of Sequences: 1657284
Number of extensions: 4545528
Number of successful extensions: 10761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10759
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)