Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054...    28   4.0  
04_03_0266 + 13648287-13649099,13649186-13649524                       27   9.1  
01_06_0252 + 27889652-27892450                                         27   9.1  

>05_03_0525 +
           15002846-15003048,15004814-15004937,15005458-15005481,
           15005995-15006779,15006839-15006873,15007108-15007601,
           15007951-15008452,15008725-15008867,15009523-15009576,
           15010255-15010362,15010529-15010705,15011169-15011186,
           15011561-15011938,15012125-15012310,15012356-15013205,
           15013362-15013402,15013491-15013868,15014195-15014236,
           15014528-15014678,15015621-15015670
          Length = 1580

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 295 WVKTSSPFFYSWLW 336
           W+ T + F YSWLW
Sbjct: 57  WIDTPATFLYSWLW 70


>04_03_0266 + 13648287-13649099,13649186-13649524
          Length = 383

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 351 TTRNLPKPRIKKRRRSLHP 295
           TTR LPK  I K++ S HP
Sbjct: 341 TTRKLPKQAIPKKKTSSHP 359


>01_06_0252 + 27889652-27892450
          Length = 932

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 425 CGVGICFWVPFC*TAAIRQVAASI 354
           CG+G+ FW P   T   R V A +
Sbjct: 371 CGIGMSFWFPAVWTVRDRSVTAGV 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,811,970
Number of Sequences: 37544
Number of extensions: 136429
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)