Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3119| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_50720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_3119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 369 SCR*YWTTRNLPKPRIKKRRRSLHPTDLH 283
           S R YW  RN+ + ++ K RR L  ++LH
Sbjct: 14  SLRLYWLQRNVRREKLPKARRPLLSSELH 42


>SB_50720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 477 LTHRSCSLLRWYPLF*FVRRWYLFLGSVLLN 385
           LTH   S + WYP+F  +  ++L L  +L+N
Sbjct: 214 LTHVKESQMTWYPIFVSIASFFLPLFIILVN 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,949,286
Number of Sequences: 59808
Number of extensions: 150556
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)