Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...   150   1e-37
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    28   0.73 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   6.8  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   9.0  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    25   9.0  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   9.0  

>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score =  150 bits (363), Expect = 1e-37
 Identities = 73/132 (55%), Positives = 90/132 (68%), Gaps = 2/132 (1%)
 Frame = +1

Query: 130 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 309
           LDEGDI LLKSY  G Y + +  ++E  + V+KR+N+  GIKESDTG            +
Sbjct: 27  LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFWDVAADR 86

Query: 310 QTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLQDSVAPTDIEEGMRVGV 483
           Q +  EQPLQVARCTKII  + +  K  Y+IN+KQ AKFVV L + V+PTDIEEGMRVG 
Sbjct: 87  QRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGC 146

Query: 484 DRNKYQIHIPLP 519
           DRNKY I +PLP
Sbjct: 147 DRNKYAIQLPLP 158


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 385 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLP 519
           K ++ V    K+VVD+   +   +I+  +RV +  + YQ+   LP
Sbjct: 80  KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILP 124


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 258 LFNACQFVNPLHYCLNSFFYFLDDFCVLSLAV*LQKRNI 142
           L+ +C F   + Y LNS FY L  + + ++ + + ++ +
Sbjct: 265 LWLSCHFYYSIIYLLNSMFYLLTFYSLRAITMLIYEQTL 303


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 373 SNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGV 483
           SNDPK   NV +FA  VV++        +E G R G+
Sbjct: 325 SNDPKVSNNVLEFAVTVVEI------NKVEGGTRSGI 355


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 364 NADSNDPKYIINVKQF 411
           N D  DPK++I+V++F
Sbjct: 135 NTDGYDPKFLISVRKF 150


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 148 QYHPRREILFLFPALLYHLSLCAYHSLNGQAF 53
           +Y  R ++  +FP L  ++S+ +YHSL    F
Sbjct: 790 KYSSRLDLNRVFPLLPKNISMKSYHSLFSSQF 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,452
Number of Sequences: 5004
Number of extensions: 30799
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)