Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306A01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 173 7e-44
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 173 7e-44
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 34 0.080
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 31 0.74
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 28 5.2
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 28 5.2
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 27 9.1
05_01_0105 + 696604-696846,696880-697989 27 9.1
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 173 bits (421), Expect = 7e-44
Identities = 84/130 (64%), Positives = 100/130 (76%)
Frame = +1
Query: 130 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 309
LDE DIALLK+YG G Y+ IK+VE+ I+ + K++N+L GIKESDTG K
Sbjct: 18 LDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLAPPSQWDLVSDK 77
Query: 310 QTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDR 489
Q +Q EQPLQVARCTKII+ +++D KY+INVKQ AKFVV L D V+PTDIEEGMRVGVDR
Sbjct: 78 QMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 137
Query: 490 NKYQIHIPLP 519
NKYQI IPLP
Sbjct: 138 NKYQIQIPLP 147
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 173 bits (421), Expect = 7e-44
Identities = 84/130 (64%), Positives = 100/130 (76%)
Frame = +1
Query: 130 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 309
LDE DIALLK+YG G Y+ IK+VE+ I+ + K++N+L GIKESDTG K
Sbjct: 18 LDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLAPPSQWDLVSDK 77
Query: 310 QTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDR 489
Q +Q EQPLQVARCTKII+ +++D KY+INVKQ AKFVV L D V+PTDIEEGMRVGVDR
Sbjct: 78 QMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 137
Query: 490 NKYQIHIPLP 519
NKYQI IPLP
Sbjct: 138 NKYQIQIPLP 147
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 33.9 bits (74), Expect = 0.080
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 385 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLP 519
K ++ V K+VVD+ S+ T I RV + + Y +H+ LP
Sbjct: 101 KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYMLHLILP 145
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 391 IINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLP 519
I+ V K+VVD+ S+ T + RV + + Y +H+ LP
Sbjct: 125 ILLVHPEGKYVVDVDKSIDITKLSPSTRVALRNDSYMLHLILP 167
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +1
Query: 349 CTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIH 507
C K N D K ++ K K V+DL P+D E + V + H
Sbjct: 701 CHKQYNVPPTDEKMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNTH 753
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 406 QFAKFVVDLQDSVAPTDIEEG 468
QFA F++D++D + P D+E G
Sbjct: 192 QFAIFLIDVRDGLQPLDLEVG 212
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -1
Query: 518 GSGMWIWYLLRSTPTLMPSSISVGATE---SCKSTTNFANCFTLIIYFGSFESALMIFVH 348
G+ +WY+L + +++P+SI G ++ F + +I + + F
Sbjct: 20 GNDFVVWYVLTTAFSILPASILRGEKNVHFRQRAKGGFGSSIGIITHELYLKITCPCFQR 79
Query: 347 RATCRG 330
R TCRG
Sbjct: 80 RCTCRG 85
>05_01_0105 + 696604-696846,696880-697989
Length = 450
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 148 ALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTG-IKESDTG 270
A ++ G+G+ ++ +++EE I + +R N+L G KE ++G
Sbjct: 206 AEVEDKGKGKVNEVNEDLEEEISLLARRFNDLLGRRKERESG 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,666,010
Number of Sequences: 37544
Number of extensions: 194809
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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