Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6286| Best HMM Match : No HMM Matches (HMM E-Value=.)              115   3e-26
SB_6665| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   3e-08
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          33   0.14 
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)                    30   1.0  
SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          29   2.3  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  

>SB_6286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score =  115 bits (276), Expect = 3e-26
 Identities = 58/76 (76%), Positives = 58/76 (76%)
 Frame = +1

Query: 250 IKESDTGXXXXXXXXXXXXKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVD 429
           IKESDTG            KQTL  EQPLQVARCTKIINADS D KYIINVKQFAKFVVD
Sbjct: 26  IKESDTGLAPPALWDLAADKQTLHGEQPLQVARCTKIINADSEDAKYIINVKQFAKFVVD 85

Query: 430 LQDSVAPTDIEEGMRV 477
           L D VAPTDIEEGMRV
Sbjct: 86  LGDQVAPTDIEEGMRV 101


>SB_6665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 26/28 (92%), Positives = 26/28 (92%)
 Frame = +1

Query: 394 INVKQFAKFVVDLQDSVAPTDIEEGMRV 477
           INVKQFAKFVVDL D VAPTDIEEGMRV
Sbjct: 63  INVKQFAKFVVDLGDQVAPTDIEEGMRV 90


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 481 VDRNKYQIHIPLP 519
           VDRNKYQIHIPLP
Sbjct: 51  VDRNKYQIHIPLP 63


>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
          Length = 610

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -1

Query: 488 RSTPTLM-PSSISVGATESCKSTTNFANCFT-LIIYFGSFESALMIFVHRATCRGC--SF 321
           RSTP     ++ +  +T    STTN    FT ++ Y  S    L  F  ++TCRGC  + 
Sbjct: 32  RSTPQHQRTTTANFPSTNPHNSTTNPTPEFTEMVCYLCSVNFTL--FKRKSTCRGCKKTL 89

Query: 320 CSVCLS 303
           CS C +
Sbjct: 90  CSNCFT 95


>SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 386 FGSFESALMIFVHRATCRGCSFCSVCLSAARSHKAGGANPVSDSLMPVSSLTL 228
           + SFES+ ++    +TC   S C    S  R+ K  G NP   +  P S+ TL
Sbjct: 555 YKSFESSALVPSRPSTCGLDSPCQTDTSICRNGKCSGGNP---NRFPTSTTTL 604


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 27/98 (27%), Positives = 50/98 (51%)
 Frame = -1

Query: 473  LMPSSISVGATESCKSTTNFANCFTLIIYFGSFESALMIFVHRATCRGCSFCSVCLSAAR 294
            L PSS+    ++   S ++F    + +  F +  S+L +F+  ++ RG     +  S++ 
Sbjct: 953  LTPSSL---LSDFLSSPSDFLTSSSSLSDFLTSSSSLRVFLTSSSSRGLLSDFLTSSSSL 1009

Query: 293  SHKAGGANPVSDSLMPVSSLTLFITV*IPSSTSLMIFV 180
            S     ++ +SD L   SSL +F+T    SS+SL  F+
Sbjct: 1010 SDFLTSSSSLSDFLTSSSSLRVFLT----SSSSLSDFL 1043


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 367  ADSNDPKYIINVKQFAKFVVDLQD 438
            ADS+DP Y   V+ FAK +VD  D
Sbjct: 2311 ADSSDPTYWPRVQSFAKNIVDYFD 2334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,645,666
Number of Sequences: 59808
Number of extensions: 236955
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)