Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306A01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1...   172   1e-43
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta...   117   6e-27
At1g53790.1 68414.m06122 F-box family protein contains Pfam PF00...    61   4e-10
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)     33   0.088
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta...    33   0.15 
At4g33900.1 68417.m04810 kelch repeat-containing F-box family pr...    29   1.4  
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa...    28   3.3  
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R...    27   7.7  

>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
           similar to 26S proteasome ATPase subunit GI:1395190 from
           [Spinacia oleracea]
          Length = 426

 Score =  172 bits (419), Expect = 1e-43
 Identities = 84/130 (64%), Positives = 99/130 (76%)
 Frame = +1

Query: 130 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 309
           LDE DIALLK+YG G Y+  IK+VE+ I+ + K++N+L GIKESDTG            K
Sbjct: 18  LDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKESDTGLAPPSQWDLVSDK 77

Query: 310 QTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDR 489
           Q +Q EQPLQVARCTKII+ ++ D KY+INVKQ AKFVV L D V+PTDIEEGMRVGVDR
Sbjct: 78  QMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 137

Query: 490 NKYQIHIPLP 519
           NKYQI IPLP
Sbjct: 138 NKYQIQIPLP 147


>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
           putative similar to  26S proteasome AAA-ATPase subunit
           RPT1 SP:Q41365 from [Spinacia oleracea]
          Length = 464

 Score =  117 bits (281), Expect = 6e-27
 Identities = 58/127 (45%), Positives = 82/127 (64%)
 Frame = +1

Query: 139 GDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXKQTL 318
           G     +++ +  Y+  IK+VE+ I  + +++  L GIKESDTG            KQ +
Sbjct: 59  GSTEASEAHFEEPYSARIKKVEKEINELAEKICNL-GIKESDTGLAPPNQWDLVSDKQMM 117

Query: 319 QNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKY 498
           Q EQPL VA CT+II+ ++ D KY++++K+  K+VV L D  +PTDIE GMRVGVD+ KY
Sbjct: 118 QEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKY 177

Query: 499 QIHIPLP 519
           QI IPLP
Sbjct: 178 QIQIPLP 184


>At1g53790.1 68414.m06122 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 444

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = +1

Query: 130 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 309
           LDE DIAL+K+YG   Y+  IK+VE+ I+ + +++N+L GIKESDTG            K
Sbjct: 10  LDEDDIALVKTYGLVPYSAPIKKVEKEIKELTEKINDLCGIKESDTG-------LAPLSK 62

Query: 310 QTLQNEQPLQV--ARCTKIINAD 372
           Q +Q  QPLQV    C + I  D
Sbjct: 63  QMMQEGQPLQVGYVSCFRYIPID 85


>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
          Length = 419

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 385 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLP 519
           K ++ V    K+VVD+  S+  T I    RV +  + Y +H+ LP
Sbjct: 96  KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLP 140


>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
           putative almost identical to 26S proteasome AAA-ATPase
           subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
           almost identical to a member of conserved Sug1 CAD
           family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
          Length = 419

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 385 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLP 519
           K ++ V    K+VVD+  S+  T +    RV +  + Y +H+ LP
Sbjct: 96  KVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLP 140


>At4g33900.1 68417.m04810 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 379

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = -1

Query: 500 WYLLRSTPTLMPSSISVGATESCKSTTNFANCFTLIIYFGSFESALMIFVHRATCRGCSF 321
           W  +  T T     + + + E CK +   +  +   +Y GS E  +   +H+   RG   
Sbjct: 191 WMEIFDTKTQTWEFLQIPSEEVCKGSEYLSISYQRTVYVGSREKDVTYKMHKGKWRGADI 250

Query: 320 C 318
           C
Sbjct: 251 C 251


>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 235

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -1

Query: 500 WYLLRSTPTLMPSSISVGATESCKSTTNFANCFTLIIYFGSFESALMIFVHRA-TCRGCS 324
           WYLLRS+P    ++ S   T+   ST    N         S   +L IF   A T     
Sbjct: 24  WYLLRSSPFNRTTAASTFFTDP-SSTPGGLN--------PSIIKSLPIFTFSAVTALFAM 74

Query: 323 FCSVCLSAARSHKAGGANP 267
            CSVCLS  + +++G   P
Sbjct: 75  ECSVCLSEFKDNESGRVMP 93


>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
           (R)-oxynitrilase, putative similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|52707];
           contains Pfam protile PF00732 GMC oxidoreductase
          Length = 552

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -2

Query: 457 YQWVRRSLVNRPQ--TLQTASR 398
           Y+WV R++V RPQ  T QTA R
Sbjct: 165 YEWVERAIVFRPQLRTWQTAIR 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,418,554
Number of Sequences: 28952
Number of extensions: 158363
Number of successful extensions: 452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)