Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305H11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 32 0.045
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 28 0.73
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.2
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 26 3.9
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 3.9
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 5.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 5.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.8
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 25 9.0
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 25 9.0
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 32.3 bits (70), Expect = 0.045
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 74 EYVLNMSNNS--ETSLSQRDKAAELPMELESIRAL---NACLQAYLEHIRNVKRNLLAMN 238
E L+++ NS E RD E + I+AL N LQ LE ++N ++NL MN
Sbjct: 307 EEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMN 366
Query: 239 DNY 247
NY
Sbjct: 367 ANY 369
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 65 NQNEYVLNMSNNSETSLSQRDKAAELPMELESIR 166
N+ E + + NN T+ R K AEL ELESIR
Sbjct: 10 NEKEELDPLLNNPLTASEFRAKKAELEAELESIR 43
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +2
Query: 41 NS*KSITINQNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKR 220
N + + +N + + + + + A L E+E RA N LQ+ L + +
Sbjct: 997 NKVSEVEVERNALLASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEYE 1056
Query: 221 NLLAM-NDNYRDLEDVNRQ 274
NLL + + + LED Q
Sbjct: 1057 NLLLISSQTNKSLEDKTNQ 1075
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/76 (22%), Positives = 38/76 (50%)
Frame = +2
Query: 65 NQNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDN 244
N+ +N S +ET +QR ++P + + +++A + + N M D
Sbjct: 151 NRYNININESYKNETKSNQR-LGEDVPSKKKYPHSMDAEISKFKWDSNNNNDWSSLMKDC 209
Query: 245 YRDLEDVNRQWQEVVE 292
+RD+ + NR+ +E+++
Sbjct: 210 FRDVVNNNRKMKEIIK 225
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 3.9
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = +2
Query: 53 SITINQNEYV-LNMSNNSETSLSQRDK-AAELPMELESIRALNACLQA-----YLEHIRN 211
+I +N Y+ + + + E+S+S+ + + P + I +LN A + +HIRN
Sbjct: 1351 AIARKENRYMSVEDATSRESSISKVESFLSRFPSKTLGIVSLNCGFHARALFYWEQHIRN 1410
Query: 212 VKRNLLAMNDNYRDLEDVNRQWQEVVEFRRE*INF 316
A+ +YR L+++ + E +NF
Sbjct: 1411 ATAPYAALESDYRVLQEIYAGIDDPDEIEAVSLNF 1445
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 133 SRATYGAGVHKGLECLPPGLFRTH*KCQ 216
+R+T+G G ++CLPP + T C+
Sbjct: 346 TRSTWGIGSEHDMQCLPPS-YETMGPCE 372
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 95 NNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDVNRQ 274
+N + S RD AA L + + +AY E + K+ L + N E VNR+
Sbjct: 518 SNDDLQKSSRDVAANLSDVKAKVSEIR---KAYDEELAKAKQISLDIETNKAQTEQVNRE 574
Query: 275 W 277
+
Sbjct: 575 Y 575
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 191 YLEHIRNVKRNLLAMNDNYRDLED----VNRQWQEVVEFRRE 304
Y + +RN ++ LL N+ Y LED + + ++ E+ RE
Sbjct: 62 YEQQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLRE 103
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/84 (21%), Positives = 38/84 (45%)
Frame = +2
Query: 11 SINTQVYY*LNS*KSITINQNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQA 190
S+N Q+ +S+T ++ +SN E + D + E E I + N+ L++
Sbjct: 698 SLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNKKLREFEGILSSNSSLKS 757
Query: 191 YLEHIRNVKRNLLAMNDNYRDLED 262
+E N + + +N+ L++
Sbjct: 758 EIEERNN---QYVTLRENFDSLQN 778
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 378 NHRHY*TLDVF-GNGSNTPYILKLIYSLLN 292
N+ Y +VF G G N+PY+ LI +N
Sbjct: 282 NYYFYYGFEVFEGTGMNSPYLSALILDAVN 311
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 378 NHRHY*TLDVF-GNGSNTPYILKLIYSLLN 292
N+ Y +VF G G N+PY+ LI +N
Sbjct: 282 NYYFYYGFEVFEGTGMNSPYLSALILDAVN 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,852
Number of Sequences: 5004
Number of extensions: 38711
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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