Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305H11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30... 33 0.18
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 30 0.98
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 30 1.3
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 29 1.7
12_01_0741 + 6649988-6653065 29 3.0
12_01_0727 + 6446283-6449300 28 5.2
06_03_1395 + 29851763-29852610,29854080-29854251 28 5.2
12_01_0736 + 6582371-6585370 27 6.9
01_01_0472 - 3473096-3474288,3474833-3474938 27 6.9
12_01_0722 + 6355972-6359031 27 9.1
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 27 9.1
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 27 9.1
>07_01_0039 -
306384-306551,306645-306749,306845-306949,307030-307111,
307457-307656,307754-307915,308043-308152,308255-308594,
308675-308749,308823-309032,309140-309343,309443-309562,
309643-309752,309832-309976,310716-310943
Length = 787
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +2
Query: 68 QNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNY 247
Q +Y N + D E E+ A+ A +LE +R +K +ND
Sbjct: 143 QRQYASLEENLKRVEAEKLDALRSYGDEKEARIAVEASRNEHLEDLRRIKLEEKRLNDQI 202
Query: 248 RDLEDVNRQWQE 283
+ L+D N++ QE
Sbjct: 203 KMLQDTNKRLQE 214
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 128 KAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLED 262
K ME E ++A C ++ + V+RN L + DN ++LED
Sbjct: 911 KGKNAEMEQELLKA-QKCSHDNMDKLHGVERNYLHLRDNLKNLED 954
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 220 KPVSYE*QLQRFGRCQPPVARSCGIQERVNQLQDVGCIGTVPKNI-*C-LVVSVIPNNLT 393
KP +YE Q PPV+ C E + ++ + C ++P ++ C L +SV P +
Sbjct: 153 KPQAYEKQCAEICVSLPPVSVDCHTPEGMTRILNY-CYSSLPADLKTCSLYLSVFPKDSR 211
Query: 394 VPRK*MTK 417
+ RK +T+
Sbjct: 212 ISRKRLTR 219
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 80 VLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYR 250
V+ + +S TS + RD AEL + + + Q EH +++R L A ++ R
Sbjct: 10 VVGVGVDSATSAAVRDGFAELERQQQLLATCTRLYQQLTEHFGSLERRLAARSETLR 66
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 68 QNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNY 247
QN YVLN+SNN + + ++ + S L +C + +I + +++ +Y
Sbjct: 479 QNLYVLNLSNNKLIVIDGENNSSLVSYPSISFLRLASCSISSFPNILRHLPEITSLDLSY 538
Query: 248 RDLEDVNRQW 277
L+ QW
Sbjct: 539 NQLQGAIPQW 548
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +2
Query: 68 QNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNY 247
QN VLN+SNN + + ++ +P S L +C + +I + ++ +Y
Sbjct: 472 QNLSVLNLSNNKLVVMDGENSSSVVPYPSISFLRLASCSISSFPNILRHLHEIAFLDLSY 531
Query: 248 RDLEDVNRQW 277
++ QW
Sbjct: 532 NQIQGAIPQW 541
>06_03_1395 + 29851763-29852610,29854080-29854251
Length = 339
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 119 QRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLE 259
QR +AAE EL ++ L+ Y+ + NV+ LL+ + +E
Sbjct: 232 QRQRAAENEQELSRVKHDFESLRTYVGTLVNVRETLLSSEKQFETME 278
>12_01_0736 + 6582371-6585370
Length = 999
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +2
Query: 68 QNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNY 247
QN VLN+SNN + + ++E S L++C + +I + +++ +Y
Sbjct: 468 QNLSVLNLSNNKLVVIDGENSSSEATYPSISFLRLSSCSISSFPNILRHLPEITSLDLSY 527
Query: 248 RDLEDVNRQW 277
+ QW
Sbjct: 528 NQIRGAIPQW 537
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 167 ALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDVNRQWQ-EVVEFRRE 304
A+N LQ+ E I N+K +L +++ + L N++ + E+V + E
Sbjct: 235 AINEKLQSSQEEINNIKNSLEVLSEEHSRLLGQNKKLEAEIVNLKEE 281
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +2
Query: 68 QNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNY 247
QN VLN+SNN + + ++ + S L +C + +I N+ +++ +Y
Sbjct: 486 QNLSVLNLSNNKLVVVDGENSSSVVSYPSISFLRLASCSISSFPNILRHLPNITSLDLSY 545
Query: 248 RDLEDVNRQW 277
++ QW
Sbjct: 546 NQIQGAIPQW 555
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 74 EYVLNMSNNSETSLSQRDKAAELPMELESIRALN 175
+Y+ N+S+ E+ L+ R K +E ME+E++ L+
Sbjct: 460 DYLGNLSSTLESFLASRIKLSESIMEMENLHMLD 493
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 56 ITINQNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYL 196
+ IN E+ + ++ S + QR+KAAEL E + AL A L
Sbjct: 161 LLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVL 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,105
Number of Sequences: 37544
Number of extensions: 233913
Number of successful extensions: 477
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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