Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2768| Best HMM Match : zf-CCCH (HMM E-Value=0.004)                  37   0.009
SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)                 31   0.76 
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        30   1.3  
SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072)                  30   1.3  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)                  29   3.1  
SB_16050| Best HMM Match : zf-RanBP (HMM E-Value=4.9)                  27   9.4  
SB_56895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_2768| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
          Length = 389

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +2

Query: 224 LLAMNDNYRDLEDVNRQWQEVVEFR 298
           ++  NDN+RDL D N +WQEV+E R
Sbjct: 92  IIVSNDNFRDLFDENPKWQEVIEHR 116


>SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)
          Length = 485

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 224 LLAMNDNYRDLEDVNRQWQEVVEFR 298
           ++  NDN+RDL   N  W+EV+E R
Sbjct: 131 VVVSNDNFRDLMRENDAWREVIETR 155


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/81 (27%), Positives = 42/81 (51%)
 Frame = +2

Query: 50   KSITINQNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLL 229
            + IT +  +   N +N+++  L +  +A +L +ELE IRA  A     +E ++  K++++
Sbjct: 827  EDITTDTRQRARNSTNSTDEKLVR--EAHKLKVELEGIRARLAEDTKQIEALQAQKQDVM 884

Query: 230  AMNDNYRDLEDVNRQWQEVVE 292
            A  D  R L     +  E+ E
Sbjct: 885  AKLDELRRLHGGKTKGSEMEE 905


>SB_12891| Best HMM Match : DUF164 (HMM E-Value=0.072)
          Length = 416

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/81 (27%), Positives = 42/81 (51%)
 Frame = +2

Query: 50  KSITINQNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLL 229
           + IT +  +   N +N+++  L +  +A +L +ELE IRA  A     +E ++  K++++
Sbjct: 12  EDITTDTRQRARNSTNSTDEKLVR--EAHKLKVELEGIRARLAEDTKQIEALQAQKQDVM 69

Query: 230 AMNDNYRDLEDVNRQWQEVVE 292
           A  D  R L     +  E+ E
Sbjct: 70  AKLDELRRLHGGKTKGSEMEE 90


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
 Frame = +2

Query: 95  NNSETSLSQRDKAAELPMELESIRALNACLQ---AYLE-HIRNVKRN----LLAMNDNYR 250
           N  +  L +++K +E+  ELE+ +     ++   A L+  I N+KRN    L  + DN  
Sbjct: 552 NTEKALLIEQEKLSEMEKELENSKDEKVKIEQEKADLDIAIENLKRNQEIELEELKDNIE 611

Query: 251 DLEDVNRQWQEVVEFRRE*INFR 319
           DLE  N++ +  +E   E I ++
Sbjct: 612 DLERENKKLKGEIECNDEMIQYQ 634


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 68   QNEYVLNMSNNSETSLSQRDKAA-ELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDN 244
            +NE +   +++ +T L   +K   +   E  S+ ALN   ++ LE  +N+  N    ND 
Sbjct: 1339 ENEKLTTENDDIKTRLEHTEKELRKTEGERSSVYALNESSRSELEEFKNMNNNFKDENDR 1398

Query: 245  YRDLED 262
             ++  D
Sbjct: 1399 LKNQND 1404


>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
          Length = 794

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 224 LLAMNDNYRDLEDVNRQWQEVVEFR 298
           ++  NDNYRDL + +  W++ +E R
Sbjct: 371 VIVSNDNYRDLLNESSDWKKAIEQR 395


>SB_16050| Best HMM Match : zf-RanBP (HMM E-Value=4.9)
          Length = 520

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 80  VLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMN 238
           VL+ + + ETS     +   L +  +  R +N  ++A+  H+RN + ++L  N
Sbjct: 275 VLSFTPHLETSDYWTAEEMSLDIATKEARVVNHVVRAFSSHLRNARVDMLVDN 327


>SB_56895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 62  INQNEYVLNMSNNSETSLSQRDKAAELPMELE 157
           ++QN Y   MS   E   SQ    A +P+ELE
Sbjct: 38  LSQNVYTARMSTEPEFRHSQNVDIARMPIELE 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,866
Number of Sequences: 59808
Number of extensions: 273470
Number of successful extensions: 632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)