Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    34   0.071
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    34   0.071
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    31   0.50 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    30   0.87 
Z70781-4|CAA94834.1|  385|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z34976-1|CAA84428.1|  681|Caenorhabditis elegans Cog2 protein pr...    27   6.2  
U61947-9|AAB03139.2|  681|Caenorhabditis elegans Conserved oligo...    27   6.2  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 246 TEIWKMSTASGKKLWNSGESKSTSGCRVYWNRSQKHLV 359
           +E+WK  + S K++W     K   G   YWNR + +++
Sbjct: 263 SEMWKNMSYSFKEVWGGSAFKGADGASRYWNRLKPYIL 300


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 246 TEIWKMSTASGKKLWNSGESKSTSGCRVYWNRSQKHLV 359
           +E+WK  + S K++W     K   G   YWNR + +++
Sbjct: 263 SEMWKNMSYSFKEVWGGSAFKGADGASRYWNRLKPYIL 300


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 191 YLEHIRNVKRNLLAMNDNYRDLEDVNRQWQEVVEFR 298
           Y+     +K  ++  ND YRDL   N  W+++VE R
Sbjct: 316 YILRTAELKDAVIVSNDEYRDLTRENPAWRKIVEER 351


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89   MSNNSETSLSQ-RDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDV 265
            + +N+E   +Q   KA EL  E+E+ +A+ A   +   H++ +++ +        DLE+ 
Sbjct: 3573 LRHNAEAVPTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPDLEER 3632

Query: 266  NRQWQEVVEFRRE 304
             R W E +  R +
Sbjct: 3633 ARLWNEFLAARND 3645



 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89   MSNNSETSLSQ-RDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDV 265
            + +N+E   +Q   KA EL  E+E+ +A+ A   +   H++ +++ +        DLE+ 
Sbjct: 4527 LRHNAEAVPTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPDLEER 4586

Query: 266  NRQWQEVVEFRRE 304
             R W E +  R +
Sbjct: 4587 ARLWNEFLAARND 4599



 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89   MSNNSETSLSQ-RDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDV 265
            + +N+E   +Q   KA EL  E+E+ +A+ A   +   H++ +++ +        DLE+ 
Sbjct: 5430 LRHNAEAVPTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPDLEER 5489

Query: 266  NRQWQEVVEFRRE 304
             R W E +  R +
Sbjct: 5490 ARLWNEFLAARND 5502



 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89   MSNNSETSLSQ-RDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDV 265
            + +N+E   +Q   KA EL  E+E+ +A+ A   +   H++ +++ +        DLE+ 
Sbjct: 6333 LRHNAEAVPTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPDLEER 6392

Query: 266  NRQWQEVVEFRRE 304
             R W E +  R +
Sbjct: 6393 ARLWNEFLAARND 6405



 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89   MSNNSETSLSQ-RDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDV 265
            + +N+E   +Q   KA EL  E+E+ +A+ A   +   H++ +++ +        DLE+ 
Sbjct: 7236 LRHNAEAVPTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPDLEER 7295

Query: 266  NRQWQEVVEFRRE 304
             R W E +  R +
Sbjct: 7296 ARLWNEFLAARND 7308


>Z70781-4|CAA94834.1|  385|Caenorhabditis elegans Hypothetical
           protein F57A8.6 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 160 HKGLECLPPGLFRTH*KCQTKPVSYE*QLQRFGRCQPPVAR 282
           +K  + LP   +RTH KC  K +  +   QRFG C P   R
Sbjct: 289 NKTEKLLPGTPYRTHQKCTNKTIIRD--DQRFGYCDPKTGR 327


>Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical
           protein C44C10.11 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +2

Query: 68  QNEYVLNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMND 241
           +NEY  N SNN E   + + + +E   +LE+ R  +   Q +LE   N K + LA+ +
Sbjct: 140 RNEYESN-SNNQEEIDATKKELSETKKQLETERQKSIESQRFLEKSCNEKVSKLAVEN 196


>Z34976-1|CAA84428.1|  681|Caenorhabditis elegans Cog2 protein
           protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 209 NVKRNLLAMNDNYRDLE-DVNRQWQEVVEFRRE 304
           ++  NL+++ D+   +E D+NR W E  E  RE
Sbjct: 82  HLSSNLVSLQDSLNKIEQDINRIWDEFKESTRE 114


>U61947-9|AAB03139.2|  681|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 2 protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 209 NVKRNLLAMNDNYRDLE-DVNRQWQEVVEFRRE 304
           ++  NL+++ D+   +E D+NR W E  E  RE
Sbjct: 82  HLSSNLVSLQDSLNKIEQDINRIWDEFKESTRE 114


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
           protein F21C10.7 protein.
          Length = 2541

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +2

Query: 65  NQNEYVLNMSNNSETSLSQRDKAAELPMELE-SIRALNACLQAYLEHIRNVKRNLLAMND 241
           N N+ V   SNN E     R K  +L +E++     L AC    L H    +  L    +
Sbjct: 710 NMNQVVTTQSNNQEQFEQVRRKIEDLKVEVDKKSEHLEAC--KTLSHNETFQTQLHKTIE 767

Query: 242 NYRDLEDVNRQWQEVVE 292
           N   +     + QE +E
Sbjct: 768 NQEQIRRTTIELQEKLE 784


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,803
Number of Sequences: 27780
Number of extensions: 215619
Number of successful extensions: 493
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)