Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.47 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 226 VSYE*QLQRFGRCQPPVARSCGIQER-VNQLQDVG 327
           ++Y   ++RF + +PPVA   G  E  +N   D G
Sbjct: 545 LNYNENIERFFKSKPPVATMYGSDEEIINSSNDEG 579


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 244 LQRFGRCQPPVARSCGIQERVNQLQDV 324
           L   G C P V +    Q+ +N+ QDV
Sbjct: 10  LVALGVCAPNVKQRAADQDLLNKQQDV 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,315
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)