Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17990.1 68415.m02091 expressed protein                             32   0.27 
At1g26310.1 68414.m03209 MADS-box protein, putative strong simil...    29   1.4  
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR...    29   2.5  
At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to ...    27   5.8  
At3g46730.1 68416.m05073 disease resistance protein (CC-NBS clas...    27   7.7  
At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative si...    27   7.7  

>At2g17990.1 68415.m02091 expressed protein 
          Length = 338

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +2

Query: 104 ETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDV 265
           E ++ QR+KA E   EL  ++     L++Y+    NV+  LL+    ++ +E++
Sbjct: 225 EETMRQREKAVENEEELCRVKREFESLKSYVSTFTNVRETLLSSERQFKTIEEL 278


>At1g26310.1 68414.m03209 MADS-box protein, putative strong
           similarity to DNA-binding protein [Brassica rapa subsp.
           pekinensis] GI:6469345, SP|Q41276 Floral homeotic
           protein APETALA1 (MADS C) {Sinapis alba}; contains
           InterPro accession IPR002100: Transcription factor,
           MADS-box
          Length = 255

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 143 PMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDVNRQWQE 283
           PM L+ ++ L   L+  L+HIR+ K  L  MN++   L+   ++ QE
Sbjct: 121 PMSLKDLQNLEQQLETALKHIRSRKNQL--MNESLNHLQRKEKEIQE 165


>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1127

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 83  LNMSNNSET-SLSQRDKAAELPMELESIRALNACLQAYLEHIRNV 214
           L+M+ N ET  LS      ELP  ++ +  LN    +Y +H+  +
Sbjct: 652 LSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDMSYCDHLETI 696


>At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to
           syntaxin-related protein Nt-syr1 GI:4206787 from
           [Nicotiana tabacum]
          Length = 303

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 182 LQAYLEHIRNVKRNLLAMNDNYRDLEDVNRQWQEV 286
           L  + E + NVK N+  +   Y+ L+D N + + V
Sbjct: 33  LDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTV 67


>At3g46730.1 68416.m05073 disease resistance protein (CC-NBS class),
           putative domain signature CC-NBS exists, suggestive of a
           disease resistance protein.
          Length = 847

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 267 TASGKKLWNSGESKSTSGCRVYWNRSQKH 353
           TA  +KL+NSG+ K    CR +   SQ++
Sbjct: 199 TALARKLYNSGDVKRRFDCRAWTYVSQEY 227


>At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative
           similar to beta-ketoacyl-CoA synthase [Simmondsia
           chinensis][GI:1045614]
          Length = 509

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 424 YAFLSFTFLVLLGY*ESPTLLDTRCFWERFQYTL 323
           Y FLS   LV+     + ++ D R  WE  QY L
Sbjct: 42  YLFLSPLVLVIAAQISTFSVTDLRSLWEHLQYNL 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,865
Number of Sequences: 28952
Number of extensions: 193986
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)