Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   0.73 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   3.0  

>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 392 PLFDTYH*SRSKHGRPAFAEINELSKILMLSPILGQDVIVTLLHNGYRSFKLEITIA 222
           PL D Y      +G P F+E N L  ++ LS  +G  ++ T+     R + +   +A
Sbjct: 42  PLVDPY----DANGNPQFSEANALKHVIHLSDDIGYRILGTIEQERAREYIMNEVLA 94


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 125 GVSAKFTKVQNYWHTYCLCAQIFK 196
           G SAK       W TYCLC   +K
Sbjct: 354 GDSAKNIPTHKLWCTYCLCLAHYK 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,420
Number of Sequences: 5004
Number of extensions: 38251
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)