Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40964| Best HMM Match : DUF564 (HMM E-Value=7.2)                    29   2.3  
SB_42215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  28   5.4  
SB_18975| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_40964| Best HMM Match : DUF564 (HMM E-Value=7.2)
          Length = 193

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -1

Query: 368 SRSKHGRPAFAEINELSKILMLSPILGQDVIVTLLHNGYRSFKLEI 231
           SRS+     F  ++ LS   ML  ++G D++ TLL   Y S KL+I
Sbjct: 93  SRSRGASRVF-RVDPLSPDKMLHVVIGDDLVNTLLELRYWSKKLDI 137


>SB_42215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 471 AAQVIIPRFIKYSSHITY*FLVLKVYSAVRYLSLKQIKARQTRFC 337
           +A +I+  F+ YSSH       L VY   RYL  +  +AR    C
Sbjct: 162 SALLIVDFFLAYSSHTLQLTSTLNVYIIFRYLGQRCRQARVRAAC 206


>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 496 DLQNVCHVRSTSD-HTAVH*ILQSHYVLISSTQGIFRCSIPIIKADQSTADPLLPKSMS 323
           +L   CH+ + +  H+A+H +L +          I+RC+  + K  Q  A  L+P+ +S
Sbjct: 255 ELLGHCHLSTRACLHSAIHALLSNLSKYPQDRASIWRCAQQLGKKHQHLASSLVPELLS 313


>SB_18975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 350 CRALI--CFNDRYRTAEYTLSTRN*YVM*LEYLMNRGMITCA 469
           C  LI  CF++R RT +Y + T +  +   +Y   R +I CA
Sbjct: 351 CARLIIECFDNRMRTFDYRMRTFDYRIYMFDYRKARLIIECA 392


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,825
Number of Sequences: 59808
Number of extensions: 262824
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)